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    2610028H24Rik RIKEN cDNA 2610028H24 gene [ Mus musculus (house mouse) ]

    Gene ID: 76964, updated on 27-Nov-2024

    Summary

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    Official Symbol
    2610028H24Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2610028H24 geneprovided by MGI
    Primary source
    MGI:MGI:1924214
    See related
    Ensembl:ENSMUSG00000009114 AllianceGenome:MGI:1924214
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    ORF67
    Summary
    Is expressed in several structures, including eye; genitourinary system; heart; lung; and thymus. Orthologous to human C21orf58 (chromosome 21 open reading frame 58). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in lung adult (RPKM 15.2), ovary adult (RPKM 8.7) and 1 other tissue See more
    Orthologs
    human all
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    Genomic context

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    See 2610028H24Rik in Genome Data Viewer
    Location:
    10 C1; 10 38.84 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (76284883..76297052)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (76449049..76461218)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene pericentrin (kendrin) Neighboring gene RIKEN cDNA 1700094J05 gene Neighboring gene STARR-seq mESC enhancer starr_27178 Neighboring gene STARR-seq mESC enhancer starr_27179 Neighboring gene STARR-seq mESC enhancer starr_27180 Neighboring gene STARR-seq mESC enhancer starr_27181 Neighboring gene predicted gene 9744 Neighboring gene STARR-seq mESC enhancer starr_27182 Neighboring gene ybeY metallopeptidase Neighboring gene minichromosome maintenance complex component 3 associated protein Neighboring gene STARR-positive B cell enhancer ABC_E6874 Neighboring gene RIKEN cDNA 4930483K19 gene Neighboring gene lanosterol synthase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A mutation in the pericentrin gene causes abnormal interneuron migration to the olfactory bulb in mice. Endoh-Yamagami S, et al. Dev Biol, 2010 Apr 1. PMID 20096683
    2. Human chromosome 21 gene expression atlas in the mouse. Reymond A, et al. Nature, 2002 Dec 5. PMID 12466854
    3. Assembly, verification, and initial annotation of the NIA mouse 7.4K cDNA clone set. VanBuren V, et al. Genome Res, 2002 Dec. PMID 12466305, Free PMC Article
    4. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    5. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C21orf58 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029816.2 → NP_084092.2  uncharacterized protein C21orf58 homolog

      See identical proteins and their annotated locations for NP_084092.2

      Status: VALIDATED

      Source sequence(s)
      AK161552, BC051454, BQ552827, BQ714071
      Consensus CDS
      CCDS35945.1
      UniProtKB/TrEMBL
      G5E8K1, Q80X27
      Related
      ENSMUSP00000090061.6, ENSMUST00000092406.12
      Conserved Domains (1) summary
      pfam15248
      Location:145 → 210
      DUF4587; Domain of unknown function (DUF4587)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      76284883..76297052
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006514295.4 → XP_006514358.1  uncharacterized protein C21orf58 homolog isoform X1

      See identical proteins and their annotated locations for XP_006514358.1

      UniProtKB/TrEMBL
      G5E8K1, Q80X27
      Conserved Domains (1) summary
      pfam15248
      Location:145 → 210
      DUF4587; Domain of unknown function (DUF4587)

    2. XM_006514297.4 → XP_006514360.1  uncharacterized protein C21orf58 homolog isoform X2

      UniProtKB/TrEMBL
      E9Q7R5, Q3TT67
      Related
      ENSMUSP00000101055.2, ENSMUST00000105415.3
      Conserved Domains (1) summary
      pfam15248
      Location:124 → 189
      DUF4587; Domain of unknown function (DUF4587)

    3. XM_036156086.1 → XP_036011979.1  uncharacterized protein C21orf58 homolog isoform X3

      UniProtKB/TrEMBL
      Q3TT67
      Conserved Domains (1) summary
      pfam15248
      Location:83 → 148
      DUF4587; Domain of unknown function (DUF4587)

    4. XM_006514298.3 → XP_006514361.1  uncharacterized protein C21orf58 homolog isoform X3

      See identical proteins and their annotated locations for XP_006514361.1

      UniProtKB/TrEMBL
      Q3TT67
      Conserved Domains (1) summary
      pfam15248
      Location:83 → 148
      DUF4587; Domain of unknown function (DUF4587)
    Nucleotide Protein Strain
    Heading Accession and Version

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