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    SHLD2P1 shieldin complex subunit 2 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 414241, updated on 10-Dec-2024

    Summary

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    Official Symbol
    SHLD2P1provided by HGNC
    Official Full Name
    shieldin complex subunit 2 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:31425
    See related
    Ensembl:ENSG00000165874 AllianceGenome:HGNC:31425
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FAM35B; FAM35BP; FAM35EP; bA38L15.1
    Expression
    Ubiquitous expression in liver (RPKM 6.4), kidney (RPKM 5.8) and 25 other tissues See more
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    Genomic context

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    See SHLD2P1 in Genome Data Viewer
    Location:
    10q11.22
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (46610472..46651976, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (47496904..47538407, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (46897641..46939145)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902419 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:46992923-46993628 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:46991512-46992217 Neighboring gene G protein regulated inducer of neurite outgrowth 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:46975535-46976296 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:46974774-46975534 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:46974012-46974773 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:46969747-46970624 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:46968867-46969746 Neighboring gene Sharpr-MPRA regulatory regions 2784 and 8617 duplicate 1 Neighboring gene SYT15 antisense RNA 1 Neighboring gene synaptotagmin 15 Neighboring gene uncharacterized LOC105378289 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:46935581-46936424 Neighboring gene long intergenic non-protein coding RNA 2637 Neighboring gene RHEB pseudogene 1 Neighboring gene RNA, 7SL, cytoplasmic 248, pseudogene Neighboring gene uncharacterized LOC101927584 Neighboring gene family with sequence similarity 245 member B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. Adams MD, et al. Nature, 1995 Sep 28. PMID 7566098

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • family with sequence similarity 35 member B, pseudogene
    • family with sequence similarity 35, member A pseudogene
    • family with sequence similarity 35, member E, pseudogene

    Clone Names

    • FLJ59018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027632.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AL356056
      Related
      ENST00000497389.7

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      46610472..46651976 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      47496904..47538407 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_022177.1: Suppressed sequence

      Description
      NG_022177.1: This RefSeq was permanently suppressed because there is sufficient evidence that this locus is transcribed.

    2. NM_001098846.1: Suppressed sequence

      Description
      NM_001098846.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version

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