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    Pramel3c PRAME like 3C [ Mus musculus (house mouse) ]

    Gene ID: 331529, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Pramel3cprovided by MGI
    Official Full Name
    PRAME like 3Cprovided by MGI
    Primary source
    MGI:MGI:3647038
    See related
    Ensembl:ENSMUSG00000094004 AllianceGenome:MGI:3647038
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm5128; EG331529; 4930481M05
    Summary
    Predicted to enable ubiquitin-like ligase-substrate adaptor activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of Cul2-RING ubiquitin ligase complex. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 3.3) See more
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    Genomic context

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    See Pramel3c in Genome Data Viewer
    Location:
    X F1; X 56.94 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (134274006..134284149)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (135373250..135383400)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 25936 Neighboring gene predicted pseudogene 6215 Neighboring gene predicted gene, 22006 Neighboring gene predicted pseudogene 6221

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    pramel3 family member

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_183320.4 → NP_899143.3  pramel3 family member

      Status: VALIDATED

      Source sequence(s)
      BX571775
      Consensus CDS
      CCDS53187.1
      UniProtKB/TrEMBL
      A2AWL1, Q1RLL5, Q8C0W2
      Related
      ENSMUSP00000137160.2, ENSMUST00000180198.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      134274006..134284149
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006528572.5 → XP_006528635.1  pramel3 family member isoform X1

      See identical proteins and their annotated locations for XP_006528635.1

      UniProtKB/TrEMBL
      J3QP96, Q8C0W2
      Related
      ENSMUSP00000108798.3, ENSMUST00000113173.9
      Conserved Domains (1) summary
      sd00033
      Location:243 → 273
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_006528573.5 → XP_006528636.1  pramel3 family member isoform X1

      See identical proteins and their annotated locations for XP_006528636.1

      UniProtKB/TrEMBL
      J3QP96, Q8C0W2
      Conserved Domains (1) summary
      sd00033
      Location:243 → 273
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

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