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    Gm2897 predicted gene 2897 [ Mus musculus (house mouse) ]

    Gene ID: 100040671, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Gm2897provided by MGI
    Official Full Name
    predicted gene 2897provided by MGI
    Primary source
    MGI:MGI:3781075
    See related
    Ensembl:ENSMUSG00000079410 AllianceGenome:MGI:3781075
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in CNS E18 (RPKM 6.0), whole brain E14.5 (RPKM 3.9) and 11 other tissues See more
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    Genomic context

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    See Gm2897 in Genome Data Viewer
    Location:
    14 A2; 14 1.62 cM
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (19383485..19420488, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (3049285..3076840)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene 5795 Neighboring gene STARR-seq mESC enhancer starr_35806 Neighboring gene predicted gene 10340 Neighboring gene esterase D/formylglutathione hydrolase, pseudogene Neighboring gene predicted gene 2888 Neighboring gene STARR-seq mESC enhancer starr_36073 Neighboring gene predicted gene, 41101

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Takusan: a large gene family that regulates synaptic activity. Tu S, et al. Neuron, 2007 Jul 5. PMID 17610818, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    General protein information

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    Preferred Names
    alpha6-takusan-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001177715.2 → NP_001171186.1  alpha6-takusan-like

      See identical proteins and their annotated locations for NP_001171186.1

      Status: VALIDATED

      Source sequence(s)
      BC028273
      Consensus CDS
      CCDS49374.1
      UniProtKB/TrEMBL
      A6NAS3, K7N6T7
      Related
      ENSMUSP00000126277.2, ENSMUST00000166494.2
      Conserved Domains (1) summary
      pfam04822
      Location:1 → 70
      Takusan; Takusan

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      19383485..19420488 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036158301.1 → XP_036014194.1  alpha6-takusan-like isoform X1

      Conserved Domains (1) summary
      pfam04822
      Location:1 → 73
      Takusan

    2. XM_036158303.1 → XP_036014196.1  alpha6-takusan-like isoform X3

    3. XM_036158302.1 → XP_036014195.1  alpha6-takusan-like isoform X2

      UniProtKB/TrEMBL
      A0AA74KT48, A0AA74KUR0
      Conserved Domains (1) summary
      pfam04822
      Location:48 → 128
      Takusan

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001177714.1: Suppressed sequence

      Description
      NM_001177714.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
    Nucleotide Protein
    Heading Accession and Version

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