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    FAM236A family with sequence similarity 236 member A [ Homo sapiens (human) ]

    Gene ID: 100129407, updated on 10-Dec-2024

    Summary

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    Official Symbol
    FAM236Aprovided by HGNC
    Official Full Name
    family with sequence similarity 236 member Aprovided by HGNC
    Primary source
    HGNC:HGNC:44268
    See related
    Ensembl:ENSG00000275520 AllianceGenome:HGNC:44268
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LINC00684; DMRTC1-AS1
    Expression
    Restricted expression toward testis (RPKM 50.5) See more
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    Genomic context

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    See FAM236A in Genome Data Viewer
    Location:
    Xq13.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (72938206..72938958)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (71371716..71372468)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (72158046..72158798)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene DMRT like family C1B Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:72027355-72027855 Neighboring gene family with sequence similarity 236 member D Neighboring gene DMRT like family C1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:72132634-72133134 Neighboring gene family with sequence similarity 236 member C Neighboring gene family with sequence similarity 226 member A Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:72179367-72179868 Neighboring gene PABPC1L2B antisense RNA 1 (head to head)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    protein FAM236A
    Names
    DMRTC1 antisense RNA 1 (non-protein coding)
    family with sequence similarity 235 member A
    long intergenic non-protein coding RNA 684

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001348070.2 → NP_001334999.1  protein FAM236A isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC234776
      Consensus CDS
      CCDS87765.1
      UniProtKB/Swiss-Prot
      A0A1B0GUQ0, A0A1B0GV22
      Related
      ENSP00000490343.2, ENST00000611003.2

    2. NM_001348071.2 → NP_001335000.1  protein FAM236A isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC234776
      Consensus CDS
      CCDS87766.1
      UniProtKB/TrEMBL
      A0A1X7SCG6
      Related
      ENSP00000490197.1, ENST00000593662.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      72938206..72938958
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060947.1 Alternate T2T-CHM13v2.0

      Range
      71371716..71372468
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NR_034116.1: Suppressed sequence

      Description
      NR_034116.1: This RefSeq was removed because it is now thought that this gene does encode a protein.

    2. NR_034117.1: Suppressed sequence

      Description
      NR_034117.1: This RefSeq was permanently suppressed because it was based on sequence from the wrong strand.

    3. NR_120499.1: Suppressed sequence

      Description
      NR_120499.1: This RefSeq was removed because it is now thought that this gene does encode a protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A1B0GUQ0.2 GenPept UniProtKB/Swiss-Prot:A0A1B0GUQ0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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