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    • Showing Current items.

    F54D1.6 Uncharacterized protein [ Caenorhabditis elegans ]

    Gene ID: 178037, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F54D1.6
    Official Full Name
    Uncharacterized protein
    Primary source
    WormBase:WBGene00010047
    Locus tag
    CELE_F54D1.6
    See related
    AllianceGenome:WB:WBGene00010047
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in cell-matrix adhesion. Predicted to be located in membrane. Predicted to be active in extracellular space. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F54D1.6 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    16
    Sequence:
    Chromosome: IV; NC_003282.8 (11287811..11294696)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene LSDAT_euk domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene putative mitochondrial tRNA-specific 2-thiouridylase 1 Neighboring gene Uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in cell-matrix adhesion IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Uncharacterized protein
    NP_502119.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      11287811..11294696
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_069718.5 → NP_502119.2  Uncharacterized protein CELE_F54D1.6 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_502119.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q20762
      Conserved Domains (2) summary
      smart00723
      Location:638 → 818
      AMOP; Adhesion-associated domain present in MUC4 and other proteins
      cl02648
      Location:185 → 349
      NIDO; Nidogen-like
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q20762.4

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