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    vig-1 Hyaluronan/mRNA-binding protein domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 173512, updated on 9-Dec-2024

    Summary

    Official Symbol
    vig-1
    Official Full Name
    Hyaluronan/mRNA-binding protein domain-containing protein
    Primary source
    WormBase:WBGene00006924
    Locus tag
    CELE_F56D12.5
    See related
    AllianceGenome:WB:WBGene00006924
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable RNA binding activity. Part of RISC complex. Is expressed in several structures, including excretory cell; hypodermis; intestine; nervous system; and reproductive system. Orthologous to human SERBP1 (SERPINE1 mRNA binding protein 1) and HABP4 (hyaluronan binding protein 4). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See vig-1 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    5
    Sequence:
    Chromosome: II; NC_003280.10 (1321037..1323073)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene FCH domain only protein 2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene JNK-interacting protein 1;PID domain-containing protein Neighboring gene tRNA Neighboring gene tRNA

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of RISC complex IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    Hyaluronan/mRNA-binding protein domain-containing protein
    NP_001367502.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      1321037..1323073
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001381327.3NP_001367502.1  Hyaluronan/mRNA-binding protein domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KYR1
      Conserved Domains (1) summary
      pfam04774
      Location:179276
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family