U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    F57C9.4 C2H2-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 172100, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    F57C9.4
    Official Full Name
    C2H2-type domain-containing protein
    Primary source
    WormBase:WBGene00019011
    Locus tag
    CELE_F57C9.4
    See related
    AllianceGenome:WB:WBGene00019011
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in gonad; hypodermis; and intestine. [provided by Alliance of Genome Resources, Dec 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See F57C9.4 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    16
    Sequence:
    Chromosome: I; NC_003279.8 (4830135..4835622)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene Twenty One u-rna (21U-RNA) biogenesis Fouled Up Neighboring gene HORMA domain-containing protein Neighboring gene Biogenesis of lysosome-related organelles complex 1 subunit 6;Biogenesis of lysosome-related organelles complex 1 subunit 7 Neighboring gene C-type LECtin Neighboring gene Putative pyridoxal kinase;pyridoxal kinase Neighboring gene Rho-GAP domain-containing protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. SH3 interactome conserves general function over specific form. Xin X, et al. Mol Syst Biol, 2013. PMID 23549480, Free PMC Article
    2. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    C2H2-type domain-containing protein
    NP_001122489.1
    • Confirmed by transcript evidence
    NP_001359822.1
    • Confirmed by transcript evidence
    NP_491459.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      4830135..4835622
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001372662.1 → NP_001359822.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KYD3
      Conserved Domains (1) summary
      pfam13851
      Location:129 → 183
      GAS; Growth-arrest specific micro-tubule binding

    2. NM_001129017.5 → NP_001122489.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001122489.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A5A8Q6
      Conserved Domains (3) summary
      sd00017
      Location:395 → 414
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:420 → 442
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:407 → 430
      zf-H2C2_2; Zinc-finger double domain

    3. NM_059058.6 → NP_491459.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_491459.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KYD4
      Conserved Domains (3) summary
      sd00017
      Location:777 → 796
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:802 → 824
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:789 → 812
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools