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    Y119D3B.12 LUC7 related splicing factor homolog;Luc7-like protein 3 [ Caenorhabditis elegans ]

    Gene ID: 175285, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y119D3B.12
    Official Full Name
    LUC7 related splicing factor homolog;Luc7-like protein 3
    Primary source
    WormBase:WBGene00022489
    Locus tag
    CELE_Y119D3B.12
    See related
    AllianceGenome:WB:WBGene00022489
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site recognition. Predicted to be located in nucleus. Predicted to be part of U1 snRNP and U2-type prespliceosome. Orthologous to human LUC7L3 (LUC7 like 3 pre-mRNA splicing factor). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y119D3B.12 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    7
    Sequence:
    Chromosome: III; NC_003281.10 (1202546..1207339)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene putative 26S proteasome complex subunit dss-1 Neighboring gene Large ribosomal subunit protein mL45 Neighboring gene ORC_WH_C domain-containing protein Neighboring gene Protein KRI1 homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. Holzer E, et al. PLoS Genet, 2022 Apr. PMID 35442950, Free PMC Article
    2. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in mRNA splice site recognition IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in mRNA splice site recognition IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of U1 snRNP IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of U2-type prespliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    LUC7 related splicing factor homolog;Luc7-like protein 3
    NP_001380070.1
    • Confirmed by transcript evidence
    NP_001380071.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      1202546..1207339
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001393275.1 → NP_001380071.1  Luc7-like protein 3 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IAB4
      Conserved Domains (1) summary
      cl27291
      Location:3 → 186
      LUC7; LUC7 N_terminus

    2. NM_001393276.1 → NP_001380070.1  LUC7 related splicing factor homolog [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2L0S8
      Conserved Domains (1) summary
      pfam03194
      Location:3 → 263
      LUC7; LUC7 N_terminus
    Nucleotide Protein
    Heading Accession and Version

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