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    vet-6 Very Early Transcript [ Caenorhabditis elegans ]

    Gene ID: 173191, updated on 9-Dec-2024

    Summary

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    Official Symbol
    vet-6
    Official Full Name
    Very Early Transcript
    Primary source
    WormBase:WBGene00006902
    Locus tag
    CELE_F44F1.7
    See related
    AllianceGenome:WB:WBGene00006902
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in gastrulation. Located in cytoplasm. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See vet-6 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    4
    Sequence:
    Chromosome: I; NC_003279.8 (13269984..13272781)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Ig-like domain-containing protein;PH_RBD domain-containing protein Neighboring gene SKICH domain-containing protein Neighboring gene pseudo Neighboring gene Mitochondrial ribosome-associated GTPase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Onset of C. elegans gastrulation is blocked by inhibition of embryonic transcription with an RNA polymerase antisense RNA. Powell-Coffman JA, et al. Dev Biol, 1996 Sep 15. PMID 8812143
    2. SEPA-1 mediates the specific recognition and degradation of P granule components by autophagy in C. elegans. Zhang Y, et al. Cell, 2009 Jan 23. PMID 19167332
    3. Repression of gene expression in the embryonic germ lineage of C. elegans. Seydoux G, et al. Nature, 1996 Aug 22. PMID 8751441
    4. Autophagy of germ-granule components, PGL-1 and PGL-3, contributes to DNA damage-induced germ cell apoptosis in C. elegans. Min H, et al. PLoS Genet, 2019 May. PMID 31125345, Free PMC Article
    5. Overcoming redundancy: an RNAi enhancer screen for morphogenesis genes in Caenorhabditis elegans. Sawyer JM, et al. Genetics, 2011 Jul. PMID 21527776, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in autophagy IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in gastrulation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Very Early Transcript
    NP_493332.1
    • Product from WormBase gene class vet;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      13269984..13272781
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_060931.9 → NP_493332.1  Very Early Transcript [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_493332.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EEK5
    Nucleotide Protein
    Heading Accession and Version

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