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    ttr-56 TransThyretin-Related family domain [ Caenorhabditis elegans ]

    Gene ID: 6418596, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ttr-56
    Official Full Name
    TransThyretin-Related family domain
    Primary source
    WormBase:WBGene00050896
    Locus tag
    CELE_F56F4.9
    See related
    AllianceGenome:WB:WBGene00050896
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in cell surface and extracellular region. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See ttr-56 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    3
    Sequence:
    Chromosome: I; NC_003279.8 (6146461..6147102)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Sodium-dependent dopamine transporter Neighboring gene Transthyretin-like family protein Neighboring gene Transthyretin-like family protein Neighboring gene Transmembrane protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in cell surface IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    TransThyretin-Related family domain
    NP_001122487.2
    • Product from WormBase gene class ttr;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      6146461..6147102
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001129015.4 → NP_001122487.2  TransThyretin-Related family domain [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001122487.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8DZ31
      Conserved Domains (1) summary
      pfam01060
      Location:1 → 80
      TTR-52; Transthyretin-like family
    Nucleotide Protein
    Heading Accession and Version

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