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    F52G3.1 BAT2 N-terminal domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 181741, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F52G3.1
    Official Full Name
    BAT2 N-terminal domain-containing protein
    Primary source
    WormBase:WBGene00018710
    Locus tag
    CELE_F52G3.1
    See related
    AllianceGenome:WB:WBGene00018710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human PRRC2A (proline rich coiled-coil 2A); PRRC2B (proline rich coiled-coil 2B); and PRRC2C (proline rich coiled-coil 2C). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F52G3.1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    15
    Sequence:
    Chromosome: X; NC_003284.9 (16963871..16972818)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene Ovule protein Neighboring gene Uncharacterized protein Neighboring gene ShKT domain-containing protein Neighboring gene C3H1-type domain-containing protein;Muscleblind-like protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly. Schaan Profes M, et al. PLoS Biol, 2024 Jan. PMID 38252619, Free PMC Article
    2. SIN-3 acts in distinct complexes to regulate the germline transcriptional program in Caenorhabditis elegans. Robert VJ, et al. Development, 2023 Nov 1. PMID 37818613, Free PMC Article
    3. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    BAT2 N-terminal domain-containing protein
    NP_510744.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      16963871..16972818
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_078343.10 → NP_510744.1  BAT2 N-terminal domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_510744.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9GZI0
      Conserved Domains (1) summary
      cl39050
      Location:3 → 149
      BAT2_N; BAT2 N-terminus
    Nucleotide Protein
    Heading Accession and Version

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