prp-39 Suppressor of forked domain-containing protein [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: prp-39
Official Full Name: Suppressor of forked domain-containing protein
Primary source: WormBase:WBGene00017768
Locus tag: CELE_F25B4.5
See related: AllianceGenome:WB:WBGene00017768
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to contribute to pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to be part of U1 snRNP; U2-type prespliceosome; and commitment complex. Orthologous to human PRPF39 (pre-mRNA processing factor 39). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See prp-39 in Genome Data Viewer

Location:: chromosome: V

Exon count:: 10

Sequence:: Chromosome: V; NC_003283.11 (5678598..5682630, complement)

Chromosome V - NC_003283.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

F25B4.5 (e-PCR)
- UniSTS:309923

F25B4.6 (e-PCR)
- UniSTS:309924

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
contributes_to pre-mRNA 5'-splice site binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in RNA processing	IEA Inferred from Electronic Annotation more info
involved_in mRNA 5'-splice site recognition	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of U1 snRNP	IBA Inferred from Biological aspect of Ancestor more info
part_of U2-type prespliceosome	IBA Inferred from Biological aspect of Ancestor more info
part_of commitment complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: Suppressor of forked domain-containing protein

NP_504495.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

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Reference assembly

Genomic

NC_003283.11 Reference assembly

Range

5678598..5682630 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_072094.6 → NP_504495.1 Suppressor of forked domain-containing protein [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_504495.1

Status: REVIEWED

UniProtKB/TrEMBL

Q22961

Conserved Domains (1) summary

smart00386
Location:114 → 145

HAT; HAT (Half-A-TPR) repeats