pdxk-1 Putative pyridoxal kinase;pyridoxal kinase [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: pdxk-1
Official Full Name: Putative pyridoxal kinase;pyridoxal kinase
Primary source: WormBase:WBGene00019008
Locus tag: CELE_F57C9.1
See related: AllianceGenome:WB:WBGene00019008
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable pyridoxal kinase activity. Predicted to be involved in pyridoxal 5'-phosphate salvage. Predicted to be active in cytosol. Orthologous to human PDXK (pyridoxal kinase). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See pdxk-1 in Genome Data Viewer

Location:: chromosome: I

Exon count:: 7

Sequence:: Chromosome: I; NC_003279.8 (4848425..4850716)

Chromosome I - NC_003279.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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General gene information

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Markers

F57C9.1 (e-PCR)
- UniSTS:311909

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables kinase activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables pyridoxal kinase activity	IBA Inferred from Biological aspect of Ancestor more info
enables pyridoxal kinase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in phosphate-containing compound metabolic process	IEA Inferred from Electronic Annotation more info
involved_in pyridoxal 5'-phosphate salvage	IBA Inferred from Biological aspect of Ancestor more info
involved_in pyridoxal 5'-phosphate salvage	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cytosol	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: Putative pyridoxal kinase;pyridoxal kinase

NP_001249733.1

Confirmed by transcript evidence

NP_491463.2

Confirmed by transcript evidence

NP_491464.2

Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003279.8 Reference assembly

Range

4848425..4850716

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_059063.6 → NP_491464.2 pyridoxal kinase [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_491464.2

Status: REVIEWED

UniProtKB/TrEMBL

G8JXZ7

Conserved Domains (1) summary

cl00192
Location:37 → 320

ribokinase_pfkB_like; ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, ...
NM_001262804.4 → NP_001249733.1 pyridoxal kinase [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_001249733.1

Status: REVIEWED

UniProtKB/TrEMBL

H1ZUV6

Conserved Domains (1) summary

cl00192
Location:17 → 300

ribokinase_pfkB_like; ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, ...
NM_059062.4 → NP_491463.2 Putative pyridoxal kinase [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_491463.2

Status: REVIEWED

UniProtKB/Swiss-Prot

O01824

Conserved Domains (1) summary

cl00192
Location:17 → 310

ribokinase_pfkB_like; ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, ...