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    gei-6 GEX Interacting protein [ Caenorhabditis elegans ]

    Gene ID: 179114, updated on 18-Sep-2024

    Summary

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    Official Symbol
    gei-6
    Official Full Name
    GEX Interacting protein
    Primary source
    WormBase:WBGene00001563
    Locus tag
    CELE_C05C8.4
    See related
    AllianceGenome:WB:WBGene00001563
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See gei-6 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    8
    Sequence:
    Chromosome: V; NC_003283.11 (7226376..7230848, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene 50S ribosomal protein L6 Neighboring gene ncRNA Neighboring gene peptidylprolyl isomerase Neighboring gene KRR1 small subunit processome component Neighboring gene Exonuclease domain-containing protein Neighboring gene BTB/POZ domain-containing protein 9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Caenorhabditis elegans mutant allele identification by whole-genome sequencing. Sarin S, et al. Nat Methods, 2008 Oct. PMID 18677319, Free PMC Article
    2. Isolation of the interacting molecules with GEX-3 by a novel functional screening. Tsuboi D, et al. Biochem Biophys Res Commun, 2002 Apr 5. PMID 11922622
    3. SH3 interactome conserves general function over specific form. Xin X, et al. Mol Syst Biol, 2013. PMID 23549480, Free PMC Article
    4. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    GEX Interacting protein
    NP_504836.1
    • Product from WormBase gene class gei;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      7226376..7230848 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_072435.7 → NP_504836.1  GEX Interacting protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_504836.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O16310
      Conserved Domains (2) summary
      PRK12323
      Location:601 → 805
      PRK12323; DNA polymerase III subunits gamma and tau; Provisional
      TIGR02169
      Location:361 → 605
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    Nucleotide Protein
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