nhr-195 NR LBD domain-containing protein;Nuclear receptor domain-containing protein [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: nhr-195
Official Full Name: NR LBD domain-containing protein;Nuclear receptor domain-containing protein
Primary source: WormBase:WBGene00019115
Locus tag: CELE_F59E11.10
See related: AllianceGenome:WB:WBGene00019115
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See nhr-195 in Genome Data Viewer

Location:: chromosome: V

Exon count:: 7

Sequence:: Chromosome: V; NC_003283.11 (8970693..8972371, complement)

Chromosome V - NC_003283.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

F59E11.10 (e-PCR)
- UniSTS:312385

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables DNA-binding transcription factor activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: NR LBD domain-containing protein;Nuclear receptor domain-containing protein

NP_001256111.1

Confirmed by transcript evidence

NP_001370765.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003283.11 Reference assembly

Range

8970693..8972371 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001383363.1 → NP_001370765.1 NR LBD domain-containing protein [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/TrEMBL

O16752

Conserved Domains (1) summary

pfam00104
Location:2 → 184

Hormone_recep; Ligand-binding domain of nuclear hormone receptor
NM_001269182.3 → NP_001256111.1 Nuclear receptor domain-containing protein [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_001256111.1

Status: REVIEWED

UniProtKB/TrEMBL

H2L098

Conserved Domains (2) summary

smart00399
Location:20 → 91

ZnF_C4; c4 zinc finger in nuclear hormone receptors

pfam00104
Location:174 → 376

Hormone_recep; Ligand-binding domain of nuclear hormone receptor