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    F39H11.1 Craniofacial development protein 1 [ Caenorhabditis elegans ]

    Gene ID: 172675, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F39H11.1
    Official Full Name
    Craniofacial development protein 1
    Primary source
    WormBase:WBGene00009565
    Locus tag
    CELE_F39H11.1
    See related
    AllianceGenome:WB:WBGene00009565
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in body wall musculature; intestine; pharynx; and reproductive system. Orthologous to human CFDP1 (craniofacial development protein 1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F39H11.1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    5
    Sequence:
    Chromosome: I; NC_003279.8 (8696603..8697596)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene MBD domain-containing protein;Pre-mRNA-splicing factor SLU7;Pre-mRNA-splicing factor SYF2 Neighboring gene putative ATP synthase subunit g 1, mitochondrial Neighboring gene Proteasome subunit beta Neighboring gene TATA box-binding protein-like 1 Neighboring gene Cyclin-dependent kinase 8 Neighboring gene Collagen alpha-1(XVIII) chain;Endostatin domain-containing protein;Fibronectin type-III domain-containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Integrating interactome, phenome, and transcriptome mapping data for the C. elegans germline. Walhout AJ, et al. Curr Biol, 2002 Nov 19. PMID 12445390
    2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    Craniofacial development protein 1
    NP_492355.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      8696603..8697596
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_059954.8 → NP_492355.1  Craniofacial development protein 1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_492355.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      P90867
      Conserved Domains (1) summary
      pfam07572
      Location:146 → 215
      BCNT; Bucentaur or craniofacial development
    Nucleotide Protein
    Heading Accession and Version

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