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    ttr-5 Transthyretin-like protein 5 [ Caenorhabditis elegans ]

    Gene ID: 176312, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ttr-5
    Official Full Name
    Transthyretin-like protein 5
    Primary source
    WormBase:WBGene00008040
    Locus tag
    CELE_C40H1.5
    See related
    AllianceGenome:WB:WBGene00008040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in cell surface and extracellular region. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See ttr-5 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    4
    Sequence:
    Chromosome: III; NC_003281.10 (9330316..9330928)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Fungal lipase-like domain-containing protein;Lipase_3 domain-containing protein Neighboring gene CEntrosomal Protein Related Neighboring gene ncRNA Neighboring gene Ubiquitin-fold modifier-conjugating enzyme 1 Neighboring gene Putative fatty acid elongase 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of protein domain families in Caenorhabditis elegans. Sonnhammer EL, et al. Genomics, 1997 Dec 1. PMID 9417907
    2. Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly. Schaan Profes M, et al. PLoS Biol, 2024 Jan. PMID 38252619, Free PMC Article
    3. SH3 interactome conserves general function over specific form. Xin X, et al. Mol Syst Biol, 2013. PMID 23549480, Free PMC Article
    4. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    5. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cell surface IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Transthyretin-like protein 5
    NP_499054.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      9330316..9330928
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_066653.4 → NP_499054.1  Transthyretin-like protein 5 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_499054.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q03575
      Conserved Domains (1) summary
      pfam01060
      Location:26 → 105
      TTR-52; Transthyretin-like family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q03575.1

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