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    idpp-12 Intrinsically Disordered Protein, expressed in Pharynx [ Caenorhabditis elegans ]

    Gene ID: 177098, updated on 9-Dec-2024

    Summary

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    Official Symbol
    idpp-12
    Official Full Name
    Intrinsically Disordered Protein, expressed in Pharynx
    Primary source
    WormBase:WBGene00021084
    Locus tag
    CELE_W08E12.3
    See related
    AllianceGenome:WB:WBGene00021084
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in pharynx. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See idpp-12 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    2
    Sequence:
    Chromosome: IV; NC_003282.8 (3303990..3304569)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene CC domain-containing protein Neighboring gene CC domain-containing protein Neighboring gene Chorion class high-cysteine HCB protein 12-like Neighboring gene Uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular genetic and biochemical characterization of a putative family of zinc metalloproteins in Caenorhabditis elegans. Chaudhuri P, et al. Metallomics, 2018 Dec 12. PMID 30444224, Free PMC Article
    2. A spatiotemporal reconstruction of the C. elegans pharyngeal cuticle reveals a structure rich in phase-separating proteins. Kamal M, et al. Elife, 2022 Oct 19. PMID 36259463, Free PMC Article
    3. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
    4. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Intrinsically Disordered Protein, expressed in Pharynx
    NP_500315.1
    • Confirmed by transcript evidence;
      Product from WormBase gene class idpp

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      3303990..3304569
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_067914.5 → NP_500315.1  Intrinsically Disordered Protein, expressed in Pharynx [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_500315.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9N5B1
    Nucleotide Protein
    Heading Accession and Version

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