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    sftd-3 Vesicle transport protein [ Caenorhabditis elegans ]

    Gene ID: 174427, updated on 9-Dec-2024

    Summary

    Official Symbol
    sftd-3
    Official Full Name
    Vesicle transport protein
    Primary source
    WormBase:WBGene00007690
    Locus tag
    CELE_C18E9.10
    See related
    AllianceGenome:WB:WBGene00007690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in protein transport and vesicle-mediated transport. Predicted to be located in several cellular components, including cytoplasm; endomembrane system; and intracellular membrane-bounded organelle. Orthologous to human SFT2D3 (SFT2 domain containing 3). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See sftd-3 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    7
    Sequence:
    Chromosome: II; NC_003280.10 (8955236..8964149, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene EF-hand domain-containing protein Neighboring gene NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 Neighboring gene Translocation protein SEC62

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
     
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Vesicle transport protein
    NP_001348653.1
    • Confirmed by transcript evidence
    NP_001348655.1
    • Confirmed by transcript evidence
    NP_001368675.1
    • Confirmed by transcript evidence
    NP_495905.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      8955236..8964149 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001361870.4NP_001348653.1  Vesicle transport protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2K5ATL4
      Conserved Domains (1) summary
      cl02130
      Location:81187
      Got1; Got1/Sft2-like family
    2. NM_063504.4NP_495905.1  Vesicle transport protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_495905.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EDD5
      Conserved Domains (1) summary
      cl02130
      Location:81225
      Got1; Got1/Sft2-like family
    3. NM_001361868.3NP_001348655.1  Vesicle transport protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2K5ATL1
      Conserved Domains (1) summary
      pfam04178
      Location:34135
      Got1; Got1/Sft2-like family
    4. NM_001381545.1NP_001368675.1  Vesicle transport protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2K5ATK0
      Conserved Domains (1) summary
      pfam04178
      Location:164
      Got1; Got1/Sft2-like family