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    rpap-3 RNA polymerase II-associated protein 3 [ Caenorhabditis elegans ]

    Gene ID: 183187, updated on 28-Oct-2024

    Summary

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    Official Symbol
    rpap-3
    Official Full Name
    RNA polymerase II-associated protein 3
    Primary source
    WormBase:WBGene00016375
    Locus tag
    CELE_C33H5.8
    See related
    AllianceGenome:WB:WBGene00016375
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See rpap-3 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    2
    Sequence:
    Chromosome: IV; NC_003282.8 (7777939..7778965, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Host cell factor homolog hcf-1 Neighboring gene WD_REPEATS_REGION domain-containing protein Neighboring gene Anaphase-promoting complex subunit 4-like WD40 domain-containing protein Neighboring gene Exocyst complex component 5 Neighboring gene Transmembrane protein 65 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Chaperone-interacting TPR proteins in Caenorhabditis elegans. Haslbeck V, et al. J Mol Biol, 2013 Aug 23. PMID 23727266
    2. CLK-2/TEL2 is a conserved component of the nonsense-mediated mRNA decay pathway. Guo Y, et al. PLoS One, 2021. PMID 33444416, Free PMC Article
    3. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    4. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    5. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    RNA polymerase II-associated protein 3
    NP_501282.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      7777939..7778965 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_068881.2 → NP_501282.1  RNA polymerase II-associated protein 3 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_501282.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q18405
      Conserved Domains (3) summary
      TIGR00990
      Location:2 → 98
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      sd00006
      Location:8 → 36
      TPR; TPR repeat [structural motif]
      pfam13877
      Location:180 → 271
      RPAP3_C; Potential Monad-binding region of RPAP3
    Nucleotide Protein
    Heading Accession and Version

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