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    C16A11.4 SPK domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 173755, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C16A11.4
    Official Full Name
    SPK domain-containing protein
    Primary source
    WormBase:WBGene00015817
    Locus tag
    CELE_C16A11.4
    See related
    AllianceGenome:WB:WBGene00015817
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See C16A11.4 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    4
    Sequence:
    Chromosome: II; NC_003280.10 (4227046..4229157)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene UNC93-like protein MFSD11 Neighboring gene FRIGIDA-like protein;PX domain-containing protein;RING-type domain-containing protein;Uncharacterized protein;Z1 domain-containing protein Neighboring gene SPK domain-containing protein Neighboring gene Protein kinase domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network. Reece-Hoyes JS, et al. Mol Cell, 2013 Jul 11. PMID 23791784, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    SPK domain-containing protein
    NP_001122586.1
    • Confirmed by transcript evidence
    NP_494744.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      4227046..4229157
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_062343.5 → NP_494744.2  SPK domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_494744.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      O76580
      Conserved Domains (2) summary
      pfam04435
      Location:117 → 221
      SPK; Domain of unknown function (DUF545)
      cl22851
      Location:35 → 78
      PHD_SF; PHD finger superfamily

    2. NM_001129114.3 → NP_001122586.1  SPK domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001122586.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KYD1
      Conserved Domains (2) summary
      pfam04435
      Location:117 → 221
      SPK; Domain of unknown function (DUF545)
      cl22851
      Location:35 → 78
      PHD_SF; PHD finger superfamily
    Nucleotide Protein
    Heading Accession and Version

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