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    F29B9.5 Thioredoxin domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 177228, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F29B9.5
    Official Full Name
    Thioredoxin domain-containing protein
    Primary source
    WormBase:WBGene00017921
    Locus tag
    CELE_F29B9.5
    See related
    AllianceGenome:WB:WBGene00017921
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in photoreceptor cell maintenance and sensory perception. Orthologous to human NXNL2 (nucleoredoxin like 2). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F29B9.5 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    4
    Sequence:
    Chromosome: IV; NC_003282.8 (4652415..4653168)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Serpentine Receptor, class T Neighboring gene Pheromone-regulated membrane protein 10 Neighboring gene SUMO-conjugating enzyme UBC9 Neighboring gene Bifunctional arginine demethylase and lysyl-hydroxylase psr-1;JmjC domain-containing protein Neighboring gene Collagen triple helix repeat protein;Nematode cuticle collagen N-terminal domain-containing protein Neighboring gene Mitochondrial Ribosomal Protein, Small

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. BRCA1/BARD1 orthologs required for DNA repair in Caenorhabditis elegans. Boulton SJ, et al. Curr Biol, 2004 Jan 6. PMID 14711411
    2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in photoreceptor cell maintenance IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in sensory perception IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Thioredoxin domain-containing protein
    NP_001379907.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      4652415..4653168
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001392300.1 → NP_001379907.1  Thioredoxin domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95Q57
      Conserved Domains (1) summary
      cd02964
      Location:10 → 145
      TryX_like_family; Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are ...
    Nucleotide Protein
    Heading Accession and Version

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