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    Bcl7c BAF chromatin remodeling complex subunit BCL7C [ Rattus norvegicus (Norway rat) ]

    Gene ID: 293514, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Bcl7cprovided by RGD
    Official Full Name
    BAF chromatin remodeling complex subunit BCL7Cprovided by RGD
    Primary source
    RGD:1308439
    See related
    EnsemblRapid:ENSRNOG00000018916 AllianceGenome:RGD:1308439
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be part of SWI/SNF complex. Orthologous to human BCL7C (BAF chromatin remodeling complex subunit BCL7C). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Thymus (RPKM 199.6), Testes (RPKM 174.5) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Bcl7c in Genome Data Viewer
    Location:
    1q37
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (191703432..191754751, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (182277163..182324274, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (199112192..199159125, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 119 Neighboring gene ring finger protein 40 Neighboring gene zinc finger protein 629 Neighboring gene 5S ribosomal RNA Neighboring gene microRNA 762 Neighboring gene cardiotrophin 1 Neighboring gene cardiotrophin 2 Neighboring gene uncharacterized LOC134483922 Neighboring gene F-box and leucine-rich repeat protein 19

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    part_of SWI/SNF complex ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    B-cell CLL/lymphoma 7 protein family member C
    Names
    B-cell CLL/lymphoma 7C
    BCL tumor suppressor 7C
    BCL7C, BAF complex component

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106298.1 → NP_001099768.1  B-cell CLL/lymphoma 7 protein family member C

      See identical proteins and their annotated locations for NP_001099768.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473956
      UniProtKB/TrEMBL
      A6I9T2
      Conserved Domains (1) summary
      pfam04714
      Location:4 → 50
      BCL_N; BCL7, N-terminal conserver region

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      191703432..191754751 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017588995.3 → XP_017444484.1  B-cell CLL/lymphoma 7 protein family member C isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZYK9
      Related
      ENSRNOP00000103249.1, ENSRNOT00000137003.1
      Conserved Domains (1) summary
      pfam04714
      Location:4 → 50
      BCL_N; BCL7, N-terminal conserver region

    2. XM_017588996.3 → XP_017444485.1  B-cell CLL/lymphoma 7 protein family member C isoform X2

      UniProtKB/TrEMBL
      A0A8I5ZYK9, A0A8I6A5R4
      Related
      ENSRNOP00000086304.2, ENSRNOT00000114284.2
      Conserved Domains (1) summary
      pfam04714
      Location:4 → 50
      BCL_N; BCL7, N-terminal conserver region

    3. XM_006230256.5 → XP_006230318.1  B-cell CLL/lymphoma 7 protein family member C isoform X3

      UniProtKB/TrEMBL
      D3ZUL4
      Related
      ENSRNOP00000025618.5, ENSRNOT00000025618.7
      Conserved Domains (1) summary
      pfam04714
      Location:4 → 50
      BCL_N; BCL7, N-terminal conserver region
    Nucleotide Protein Strain
    Heading Accession and Version

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