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    CTNNA2-AS1 CTNNA2 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 101927987, updated on 10-Dec-2024

    Summary

    Official Symbol
    CTNNA2-AS1provided by HGNC
    Official Full Name
    CTNNA2 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:40165
    See related
    AllianceGenome:HGNC:40165
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.1) See more
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    Genomic context

    See CTNNA2-AS1 in Genome Data Viewer
    Location:
    2p12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (79493716..79500844, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (79494100..79501227, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (79720842..79727970, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374823 Neighboring gene regenerating family member 3 alpha Neighboring gene catenin alpha 2 Neighboring gene NANOG hESC enhancer GRCh37_chr2:79620883-79621450 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_59361 Neighboring gene NANOG hESC enhancer GRCh37_chr2:79779842-79780343 Neighboring gene GNA13 pseudogene 1 Neighboring gene RNA, U6 small nuclear 561, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110289.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC010975

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      79493716..79500844 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      79494100..79501227 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)