U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ADAMTS16-DT ADAMTS16 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 101929176, updated on 10-Dec-2024

    Summary

    Official Symbol
    ADAMTS16-DTprovided by HGNC
    Official Full Name
    ADAMTS16 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:55548
    See related
    Ensembl:ENSG00000250579 AllianceGenome:HGNC:55548
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CTD-2297D10.2
    Expression
    Biased expression in ovary (RPKM 4.9), kidney (RPKM 0.8) and 1 other tissue See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See ADAMTS16-DT in Genome Data Viewer
    Location:
    5p15.32
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (5132085..5140054, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (5059708..5067688, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (5132198..5140167, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1020 Neighboring gene long intergenic non-protein coding RNA 2121 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22322 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:5139649-5140215 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:5145575-5146774 Neighboring gene RN7SK pseudogene 73 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 16 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:5175316-5175816 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:5175817-5176317 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancers GRCh37_chr5:5179213-5179956 and GRCh37_chr5:5179957-5180699 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:5182558-5183381 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:5183382-5184206 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:5199611-5200127 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:5241793-5242294 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:5242295-5242794 Neighboring gene uncharacterized LOC101929200 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:5271408-5272068 Neighboring gene Sharpr-MPRA regulatory region 1512 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:5325702-5326669 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:5341091-5341592 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:5341593-5342092 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:5352015-5352515 Neighboring gene ALG3 pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_109915.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AI479586, AK094462, CN285426, DN602141
      Related
      ENST00000512155.4

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      5132085..5140054 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      5059708..5067688 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)