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    BC030500 cDNA sequence BC030500 [ Mus musculus (house mouse) ]

    Gene ID: 234290, updated on 27-Nov-2024

    Summary

    Official Symbol
    BC030500provided by MGI
    Official Full Name
    cDNA sequence BC030500provided by MGI
    Primary source
    MGI:MGI:2447770
    See related
    Ensembl:ENSMUSG00000049946 AllianceGenome:MGI:2447770
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in CNS E18 (RPKM 5.5), frontal lobe adult (RPKM 4.8) and 7 other tissues See more
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    Genomic context

    See BC030500 in Genome Data Viewer
    Location:
    8 B2; 8 30.82 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (59364789..59367332)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (58911755..58914298)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6 Neighboring gene STARR-seq mESC enhancer starr_21548 Neighboring gene predicted gene 15881 Neighboring gene predicted gene, 57526 Neighboring gene STARR-seq mESC enhancer starr_21549 Neighboring gene STARR-seq mESC enhancer starr_21550 Neighboring gene RuvB-like protein 1 pseudogene Neighboring gene 3-phosphoglycerate dehydrogenase pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Clone Names

    • MGC40983

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC234290

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_173411.2NP_775587.1  uncharacterized protein LOC234290

      See identical proteins and their annotated locations for NP_775587.1

      Status: VALIDATED

      Source sequence(s)
      AC135357
      Consensus CDS
      CCDS40345.1
      UniProtKB/TrEMBL
      Q8K0R8
      Related
      ENSMUSP00000131717.2, ENSMUST00000062978.7

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      59364789..59367332
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006509390.4XP_006509453.1  uncharacterized protein LOC234290 isoform X1

      UniProtKB/TrEMBL
      E9Q6W0