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    Tex47 testis expressed 47 [ Mus musculus (house mouse) ]

    Gene ID: 70920, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Tex47provided by MGI
    Official Full Name
    testis expressed 47provided by MGI
    Primary source
    MGI:MGI:1918170
    See related
    Ensembl:ENSMUSG00000040514 AllianceGenome:MGI:1918170
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4921511H03Rik
    Summary
    Orthologous to human TEX47 (testis expressed 47). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 4.8) See more
    Orthologs
    human all
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    Genomic context

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    See Tex47 in Genome Data Viewer
    Location:
    5 A1; 5 3.37 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (7354106..7368290)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (7304106..7318290)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 804B Neighboring gene tubulin, beta 4B class IVB, pseudogene 1 Neighboring gene STARR-seq mESC enhancer starr_12371 Neighboring gene predicted gene, 24525 Neighboring gene STARR-seq mESC enhancer starr_12372 Neighboring gene STARR-seq mESC enhancer starr_12373 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene predicted gene, 57840

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    testis-expressed protein 47
    Names
    uncharacterized protein C7orf62 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027603.2 → NP_081879.1  testis-expressed protein 47

      See identical proteins and their annotated locations for NP_081879.1

      Status: PROVISIONAL

      Source sequence(s)
      AK076678
      Consensus CDS
      CCDS19078.1
      UniProtKB/Swiss-Prot
      Q9D5W8
      Related
      ENSMUSP00000086176.3, ENSMUST00000088796.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      7354106..7368290
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006503604.4 → XP_006503667.1  testis-expressed protein 47 isoform X1

      See identical proteins and their annotated locations for XP_006503667.1

      UniProtKB/Swiss-Prot
      Q9D5W8
      Related
      ENSMUSP00000124368.2, ENSMUST00000159546.2
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9D5W8.1 GenPept UniProtKB/Swiss-Prot:Q9D5W8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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