U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    BC005537 cDNA sequence BC005537 [ Mus musculus (house mouse) ]

    Gene ID: 79555, updated on 27-Nov-2024

    Summary

    Official Symbol
    BC005537provided by MGI
    Official Full Name
    cDNA sequence BC005537provided by MGI
    Primary source
    MGI:MGI:2441726
    See related
    Ensembl:ENSMUSG00000019132 AllianceGenome:MGI:2441726
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    8030460C05Rik
    Summary
    Is expressed in central nervous system and retina. Orthologous to human C6orf62 (chromosome 6 open reading frame 62). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in adrenal adult (RPKM 92.5), ovary adult (RPKM 63.9) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See BC005537 in Genome Data Viewer
    Location:
    13 A3.1; 13 10.68 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (24985640..24996882)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (24801657..24812899)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene armadillo-like helical domain containing 2 Neighboring gene STARR-positive B cell enhancer ABC_E7216 Neighboring gene geminin Neighboring gene STARR-seq mESC enhancer starr_33986 Neighboring gene STARR-positive B cell enhancer ABC_E8519 Neighboring gene STARR-seq mESC enhancer starr_33987 Neighboring gene predicted gene, 22358 Neighboring gene acyl-CoA thioesterase 13 Neighboring gene STARR-positive B cell enhancer ABC_E924 Neighboring gene tyrosyl-DNA phosphodiesterase 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General protein information

    Preferred Names
    uncharacterized protein C6orf62 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_024473.3NP_077793.1  uncharacterized protein C6orf62 homolog

      See identical proteins and their annotated locations for NP_077793.1

      Status: PREDICTED

      Source sequence(s)
      AL589699
      Consensus CDS
      CCDS26379.1
      UniProtKB/Swiss-Prot
      Q99LU8
      UniProtKB/TrEMBL
      Q3TVJ4
      Related
      ENSMUSP00000019276.5, ENSMUST00000019276.12
      Conserved Domains (1) summary
      pfam15130
      Location:1226
      DUF4566; Domain of unknown function (DUF4566)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      24985640..24996882
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)