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    Slc35g1 solute carrier family 35, member G1 [ Mus musculus (house mouse) ]

    Gene ID: 240660, updated on 9-Dec-2024

    Summary

    Official Symbol
    Slc35g1provided by MGI
    Official Full Name
    solute carrier family 35, member G1provided by MGI
    Primary source
    MGI:MGI:2444789
    See related
    Ensembl:ENSMUSG00000044026 AllianceGenome:MGI:2444789
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Tmem20; D330039I19Rik
    Summary
    Predicted to be involved in calcium ion export across plasma membrane and regulation of cytosolic calcium ion concentration. Predicted to be active in endoplasmic reticulum membrane and plasma membrane. Is expressed in eye; genitourinary system; gut; nervous system; and trachea. Orthologous to human SLC35G1 (solute carrier family 35 member G1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in bladder adult (RPKM 16.2), large intestine adult (RPKM 13.1) and 17 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Slc35g1 in Genome Data Viewer
    Location:
    19 C3; 19 33.03 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (38384428..38394055)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (38395980..38405607)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_46090 Neighboring gene predicted gene, 41844 Neighboring gene predicted gene, 18936 Neighboring gene predicted gene, 46666 Neighboring gene STARR-seq mESC enhancer starr_46093 Neighboring gene STARR-seq mESC enhancer starr_46094 Neighboring gene STARR-seq mESC enhancer starr_46095 Neighboring gene phospholipase C, epsilon 1 Neighboring gene STARR-seq mESC enhancer starr_46096 Neighboring gene STARR-seq mESC enhancer starr_46098 Neighboring gene adaptor protein complex AP-2, mu1 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in endoplasmic reticulum membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in endoplasmic reticulum membrane ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    solute carrier family 35 member G1
    Names
    transmembrane protein 20

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_175507.3NP_780716.1  solute carrier family 35 member G1

      See identical proteins and their annotated locations for NP_780716.1

      Status: VALIDATED

      Source sequence(s)
      AC116871, AC124632
      Consensus CDS
      CCDS29787.1
      UniProtKB/Swiss-Prot
      B2RPY9, Q8BY79
      Related
      ENSMUSP00000061282.3, ENSMUST00000054098.4
      Conserved Domains (2) summary
      COG0697
      Location:73362
      RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]
      pfam00892
      Location:72205
      EamA; EamA-like transporter family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      38384428..38394055
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)