Scp2d1 SCP2 sterol-binding domain containing 1 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Scp2d1provided by MGI
Official Full Name: SCP2 sterol-binding domain containing 1provided by MGI
Primary source: MGI:MGI:1913578
See related: Ensembl:ENSMUSG00000027431 AllianceGenome:MGI:1913578
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: 1700010M22Rik
Summary: Predicted to be active in cytosol. Orthologous to human SCP2D1 (SCP2 sterol binding domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: 2 G1; 2 71.02 cM

Exon count:: 1

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	2	NC_000068.8 (144665586..144666335)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	2	NC_000068.7 (144823666..144824415)

Chromosome 2 - NC_000068.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Variation

Go to the top of the page Help

Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (1) 1 citation

General gene information

Go to the top of the page Help

Markers

D2Dcr98 (e-PCR), detects polymorphism
- UniSTS:507657

D2Mit168 (e-PCR), detects polymorphism
- UniSTS:129033

D2Mit168.2 (e-PCR), detects polymorphism
- UniSTS:129034

BE102219 (e-PCR)
- UniSTS:244100

Gene Ontology Provided by MGI

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info
is_active_in cytosol	IBA Inferred from Biological aspect of Ancestor more info

General protein information

Go to the top of the page Help

Preferred Names: SCP2 sterol-binding domain-containing protein 1

Names: likely ortholog of H. sapiens chromosome 20 open reading frame 79 (C20orf79)

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.