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    Fam169b family with sequence similarity 169, member B [ Mus musculus (house mouse) ]

    Gene ID: 434197, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Fam169bprovided by MGI
    Official Full Name
    family with sequence similarity 169, member Bprovided by MGI
    Primary source
    MGI:MGI:3644026
    See related
    Ensembl:ENSMUSG00000074071 AllianceGenome:MGI:3644026
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG434197
    Summary
    Orthologous to human FAM169BP (family with sequence similarity 169 member B, pseudogene). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in thymus adult (RPKM 18.2), spleen adult (RPKM 6.8) and 4 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Fam169b in Genome Data Viewer
    Location:
    7 C; 7 37.49 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (67923587..68012837)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (68273839..68363089)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene insulin-like growth factor I receptor Neighboring gene predicted gene, 51487 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:75350823-75351006 Neighboring gene pyroglutamyl-peptidase I-like Neighboring gene STARR-positive B cell enhancer ABC_E8177 Neighboring gene STARR-seq mESC enhancer starr_19114 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:75434034-75434217 Neighboring gene aging liver Treg-expressed non-protein coding RNA Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:75468056-75468239 Neighboring gene predicted gene 16158 Neighboring gene RIKEN cDNA 4933436H12 gene Neighboring gene predicted gene, 34549

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
    3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    protein FAM169B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013811.3 → NP_001013833.1  protein FAM169B isoform 2

      See identical proteins and their annotated locations for NP_001013833.1

      Status: VALIDATED

      Source sequence(s)
      AC116515, AC125275
      Consensus CDS
      CCDS85317.1
      UniProtKB/Swiss-Prot
      Q8CHT6
      Related
      ENSMUSP00000146700.2, ENSMUST00000125685.9

    2. NM_001374636.1 → NP_001361565.1  protein FAM169B isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC116515, AC125275
      Consensus CDS
      CCDS90253.1
      UniProtKB/TrEMBL
      A0A1B0GRP6
      Related
      ENSMUSP00000147610.2, ENSMUST00000210558.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      67923587..68012837
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006540973.3 → XP_006541036.1  protein FAM169B isoform X1

    2. XM_006540975.4 → XP_006541038.1  protein FAM169B isoform X2

    3. XM_030242739.2 → XP_030098599.1  protein FAM169B isoform X4

    4. XM_011250874.2 → XP_011249176.1  protein FAM169B isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8CHT6.1 GenPept UniProtKB/Swiss-Prot:Q8CHT6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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