NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001110145.2 → NP_001103615.1 lupus La protein homolog isoform a
See identical proteins and their annotated locations for NP_001103615.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2, 5, 6, and 7 all encode the same isoform (a).
- Source sequence(s)
-
AL845261, AL929249, BX322634
- Consensus CDS
-
CCDS16101.1
- UniProtKB/Swiss-Prot
-
P32067
- UniProtKB/TrEMBL
- Q3TG93, Q564E6, Q8BTU4
- Related
- ENSMUSP00000088365.5, ENSMUST00000090852.11
- Conserved Domains (3) summary
-
- cd08028
Location:10 → 91
- LARP_3; La RNA-binding domain of La-related protein 3
- cd12291
Location:112 → 183
- RRM1_La; RNA recognition motif 1 in La autoantigen (La or LARP3) and similar proteins
- pfam08777
Location:230 → 333
- RRM_3; RNA binding motif
-
NM_001355265.2 → NP_001342194.1 lupus La protein homolog isoform b
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR and uses an alternate in-frame splice junction in the 3' end compared to variant 1. The resulting isoform (b) has the same N- and C-termini but is 1 aa shorter compared to isoform a. Variants 3, 8, and 9 all encode the same isoform (b).
- Source sequence(s)
-
AL845261, AL929249, BX322634
- UniProtKB/TrEMBL
- Q3TG93, Q8BTU4
- Conserved Domains (3) summary
-
- cd08028
Location:10 → 91
- LARP_3; La RNA-binding domain of La-related protein 3
- cd12291
Location:112 → 183
- RRM1_La; RNA recognition motif 1 in La autoantigen (La or LARP3) and similar proteins
- cd12541
Location:230 → 306
- RRM2_La; RNA recognition motif 2 in La autoantigen (La or LARP3) and similar proteins
-
NM_001421043.1 → NP_001407972.1 lupus La protein homolog isoform a
Status: VALIDATED
- Source sequence(s)
-
AL845261, AL929249, BX322634
- UniProtKB/Swiss-Prot
-
P32067
- UniProtKB/TrEMBL
- Q3TG93, Q564E6, Q8BTU4
-
NM_001421044.1 → NP_001407973.1 lupus La protein homolog isoform a
Status: VALIDATED
- Source sequence(s)
-
AL845261, AL929249, BX322634
- UniProtKB/Swiss-Prot
-
P32067
- UniProtKB/TrEMBL
- Q3TG93, Q564E6, Q8BTU4
-
NM_001421045.1 → NP_001407974.1 lupus La protein homolog isoform a
Status: VALIDATED
- Source sequence(s)
-
AL845261, AL929249, BX322634
- UniProtKB/Swiss-Prot
-
P32067
- UniProtKB/TrEMBL
- Q3TG93, Q564E6, Q8BTU4
-
NM_001421046.1 → NP_001407975.1 lupus La protein homolog isoform b
Status: VALIDATED
- Source sequence(s)
-
AL845261, AL929249, BX322634
- UniProtKB/TrEMBL
- Q3TG93, Q8BTU4
-
NM_001421049.1 → NP_001407978.1 lupus La protein homolog isoform b
Status: VALIDATED
- Source sequence(s)
-
AL845261, AL929249, BX322634
- UniProtKB/TrEMBL
- Q3TG93, Q8BTU4
-
NM_001421050.1 → NP_001407979.1 lupus La protein homolog isoform c
Status: VALIDATED
- Source sequence(s)
-
AL845261, AL929249, BX322634
- UniProtKB/TrEMBL
- Q3TG93, Q8BTU4
-
NM_001421052.1 → NP_001407981.1 lupus La protein homolog isoform c
Status: VALIDATED
- Source sequence(s)
-
AL845261, AL929249, BX322634
- UniProtKB/TrEMBL
- Q3TG93, Q8BTU4
-
NM_001421053.1 → NP_001407982.1 lupus La protein homolog isoform c
Status: VALIDATED
- Source sequence(s)
-
AL845261, AL929249, BX322634
- UniProtKB/TrEMBL
- Q3TG93, Q8BTU4
-
NM_001421054.1 → NP_001407983.1 lupus La protein homolog isoform d
Status: VALIDATED
- Source sequence(s)
-
AL845261, AL929249, BX322634
- UniProtKB/TrEMBL
- Q3TG93, Q8BTU4
-
NM_009278.5 → NP_033304.1 lupus La protein homolog isoform a
See identical proteins and their annotated locations for NP_033304.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (a). Variants 1, 2, 5, 6, and 7 all encode the same isoform (a).
- Source sequence(s)
-
AL845261, AL929249, BX322634
- Consensus CDS
-
CCDS16101.1
- UniProtKB/Swiss-Prot
-
P32067
- UniProtKB/TrEMBL
- Q3TG93, Q564E6, Q8BTU4
- Related
- ENSMUSP00000130313.2, ENSMUST00000166411.8
- Conserved Domains (3) summary
-
- cd08028
Location:10 → 91
- LARP_3; La RNA-binding domain of La-related protein 3
- cd12291
Location:112 → 183
- RRM1_La; RNA recognition motif 1 in La autoantigen (La or LARP3) and similar proteins
- pfam08777
Location:230 → 333
- RRM_3; RNA binding motif
RNA
-
NR_149321.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR and lacks an alternate exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AL845261, AL929249, BX322634
- Related
-
ENSMUST00000132186.8
-
NR_185233.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL845261, AL929249, BX322634
-
NR_185234.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL845261, AL929249, BX322634
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000068.8 Reference GRCm39 C57BL/6J
- Range
-
69691963..69702185
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)