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    Atxn7l1 ataxin 7-like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362726, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Atxn7l1provided by RGD
    Official Full Name
    ataxin 7-like 1provided by RGD
    Primary source
    RGD:1305730
    See related
    EnsemblRapid:ENSRNOG00000010415 AllianceGenome:RGD:1305730
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Atxn7l4; RGD1305730; RGD1564242
    Summary
    Orthologous to human ATXN7L1 (ataxin 7 like 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Thymus (RPKM 32.1), Spleen (RPKM 30.8) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Atxn7l1 in Genome Data Viewer
    Location:
    6q16
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (55487309..55709751)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (49759876..49982323)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (52459930..52680552)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134479364 Neighboring gene uncharacterized LOC102547703 Neighboring gene uncharacterized LOC102549100 Neighboring gene uncharacterized LOC108351223 Neighboring gene EF-hand calcium binding domain 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    ataxin-7-like protein 1
    Names
    ataxin 7-like 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001427851.1 → NP_001414780.1  ataxin-7-like protein 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      55487309..55709751
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039113162.2 → XP_038969090.1  ataxin-7-like protein 1 isoform X2

      Conserved Domains (1) summary
      pfam08313
      Location:309 → 369
      SCA7; zinc-binding domain

    2. XM_039113164.2 → XP_038969092.1  ataxin-7-like protein 1 isoform X3

      Conserved Domains (1) summary
      pfam08313
      Location:309 → 369
      SCA7; zinc-binding domain

    3. XM_063262082.1 → XP_063118152.1  ataxin-7-like protein 1 isoform X10

    4. XM_008764632.4 → XP_008762854.1  ataxin-7-like protein 1 isoform X5

      See identical proteins and their annotated locations for XP_008762854.1

      UniProtKB/TrEMBL
      A0A8I5ZWG0
      Conserved Domains (1) summary
      pfam08313
      Location:276 → 342
      SCA7; SCA7, zinc-binding domain

    5. XM_006240016.5 → XP_006240078.1  ataxin-7-like protein 1 isoform X14

      See identical proteins and their annotated locations for XP_006240078.1

      UniProtKB/TrEMBL
      A0A8I6G9H2
      Conserved Domains (1) summary
      pfam08313
      Location:276 → 342
      SCA7; SCA7, zinc-binding domain

    6. XM_008764634.3 → XP_008762856.1  ataxin-7-like protein 1 isoform X15

      See identical proteins and their annotated locations for XP_008762856.1

      Conserved Domains (1) summary
      pfam08313
      Location:276 → 342
      SCA7; SCA7, zinc-binding domain

    7. XM_063262092.1 → XP_063118162.1  ataxin-7-like protein 1 isoform X23

    8. XM_039113161.2 → XP_038969089.1  ataxin-7-like protein 1 isoform X1

      Conserved Domains (1) summary
      pfam08313
      Location:309 → 369
      SCA7; zinc-binding domain

    9. XM_039113167.2 → XP_038969095.1  ataxin-7-like protein 1 isoform X8

      Conserved Domains (1) summary
      pfam08313
      Location:309 → 369
      SCA7; zinc-binding domain

    10. XM_006240015.5 → XP_006240077.1  ataxin-7-like protein 1 isoform X12

      See identical proteins and their annotated locations for XP_006240077.1

      Conserved Domains (1) summary
      pfam08313
      Location:276 → 342
      SCA7; SCA7, zinc-binding domain

    11. XM_006240019.5 → XP_006240081.1  ataxin-7-like protein 1 isoform X24

      See identical proteins and their annotated locations for XP_006240081.1

      UniProtKB/TrEMBL
      B2GV59, D3ZTM4

    12. XM_039113165.2 → XP_038969093.1  ataxin-7-like protein 1 isoform X4

      Conserved Domains (1) summary
      pfam08313
      Location:286 → 346
      SCA7; zinc-binding domain

    13. XM_063262087.1 → XP_063118157.1  ataxin-7-like protein 1 isoform X17

    14. XM_039113166.2 → XP_038969094.1  ataxin-7-like protein 1 isoform X7

      Conserved Domains (1) summary
      pfam08313
      Location:225 → 285
      SCA7; zinc-binding domain

    15. XM_063262078.1 → XP_063118148.1  ataxin-7-like protein 1 isoform X6

    16. XM_063262079.1 → XP_063118149.1  ataxin-7-like protein 1 isoform X7

    17. XM_063262091.1 → XP_063118161.1  ataxin-7-like protein 1 isoform X21

    18. XM_006240014.5 → XP_006240076.1  ataxin-7-like protein 1 isoform X11

      See identical proteins and their annotated locations for XP_006240076.1

      Conserved Domains (1) summary
      pfam08313
      Location:185 → 245
      SCA7; zinc-binding domain

    19. XM_063262085.1 → XP_063118155.1  ataxin-7-like protein 1 isoform X16

    20. XM_063262089.1 → XP_063118159.1  ataxin-7-like protein 1 isoform X20

      UniProtKB/TrEMBL
      F1M9V0
      Related
      ENSRNOP00000014054.8, ENSRNOT00000014054.10

    21. XM_039113168.2 → XP_038969096.1  ataxin-7-like protein 1 isoform X11

      Conserved Domains (1) summary
      pfam08313
      Location:185 → 245
      SCA7; zinc-binding domain

    22. XM_006240013.5 → XP_006240075.1  ataxin-7-like protein 1 isoform X11

      See identical proteins and their annotated locations for XP_006240075.1

      Conserved Domains (1) summary
      pfam08313
      Location:185 → 245
      SCA7; zinc-binding domain

    23. XM_063262084.1 → XP_063118154.1  ataxin-7-like protein 1 isoform X13

    24. XM_063262088.1 → XP_063118158.1  ataxin-7-like protein 1 isoform X18

    25. XM_063262081.1 → XP_063118151.1  ataxin-7-like protein 1 isoform X9

    26. XM_063262083.1 → XP_063118153.1  ataxin-7-like protein 1 isoform X11

    27. XM_063262086.1 → XP_063118156.1  ataxin-7-like protein 1 isoform X16

    28. XM_063262090.1 → XP_063118160.1  ataxin-7-like protein 1 isoform X21

    29. XM_006240017.4 → XP_006240079.1  ataxin-7-like protein 1 isoform X19

      See identical proteins and their annotated locations for XP_006240079.1

      Conserved Domains (1) summary
      pfam08313
      Location:59 → 125
      SCA7; SCA7, zinc-binding domain

    30. XM_006240018.4 → XP_006240080.1  ataxin-7-like protein 1 isoform X19

      See identical proteins and their annotated locations for XP_006240080.1

      Conserved Domains (1) summary
      pfam08313
      Location:59 → 125
      SCA7; SCA7, zinc-binding domain

    31. XM_039113169.2 → XP_038969097.1  ataxin-7-like protein 1 isoform X22

      Conserved Domains (1) summary
      pfam08313
      Location:8 → 42
      SCA7; zinc-binding domain

    RNA

    1. XR_005505854.2 RNA Sequence

    2. XR_005505855.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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