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    Phf11b PHD finger protein 11B [ Mus musculus (house mouse) ]

    Gene ID: 236451, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Phf11bprovided by MGI
    Official Full Name
    PHD finger protein 11Bprovided by MGI
    Primary source
    MGI:MGI:3645789
    See related
    Ensembl:ENSMUSG00000091649 AllianceGenome:MGI:3645789
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm4902; EG236451
    Summary
    Predicted to be located in nuclear membrane and nucleoplasm. Predicted to be active in nucleus. Orthologous to human PHF11 (PHD finger protein 11). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in spleen adult (RPKM 7.0), mammary gland adult (RPKM 5.4) and 20 other tissues See more
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    Genomic context

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    See Phf11b in Genome Data Viewer
    Location:
    14 C3; 14 31.48 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (59558413..59578826, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (59320964..59341388, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene PHD finger protein 11 Neighboring gene PHD finger protein 11A Neighboring gene STARR-positive B cell enhancer mm9_chr14:59916339-59916640 Neighboring gene STARR-positive B cell enhancer ABC_E11570 Neighboring gene STARR-seq mESC enhancer starr_36838 Neighboring gene PHD finger protein 11D Neighboring gene STARR-seq mESC enhancer starr_36839 Neighboring gene predicted gene, 45935 Neighboring gene PHD finger protein 11C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Functional analysis of a novel ENU-induced PHD finger 11 (Phf11) mouse mutant. Zhang Y, et al. Mamm Genome, 2014 Dec. PMID 25091723, Free PMC Article
    2. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nuclear membrane ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    PHD finger protein 11 family member

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001164327.1 → NP_001157799.1  PHD finger protein 11 family member

      See identical proteins and their annotated locations for NP_001157799.1

      Status: VALIDATED

      Source sequence(s)
      AC114007
      Consensus CDS
      CCDS49510.1
      UniProtKB/TrEMBL
      B4XVQ1
      Related
      ENSMUSP00000127857.2, ENSMUST00000166121.4
      Conserved Domains (1) summary
      cl22851
      Location:28 → 142
      PHD_SF; PHD finger superfamily

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      59558413..59578826 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006518927.4 → XP_006518990.1  PHD finger protein 11 family member isoform X1

      Conserved Domains (1) summary
      cl22851
      Location:28 → 142
      PHD_SF; PHD finger superfamily

    2. XM_030247783.2 → XP_030103643.1  PHD finger protein 11 family member isoform X4

      Conserved Domains (1) summary
      cl22851
      Location:1 → 88
      PHD_SF; PHD finger superfamily

    3. XM_006518928.5 → XP_006518991.1  PHD finger protein 11 family member isoform X3

      Conserved Domains (1) summary
      cl22851
      Location:1 → 88
      PHD_SF; PHD finger superfamily

    4. XM_036158581.1 → XP_036014474.1  PHD finger protein 11 family member isoform X2

      Conserved Domains (1) summary
      cl22851
      Location:6 → 120
      PHD_SF; PHD finger superfamily
    Nucleotide Protein Strain
    Heading Accession and Version

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