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    Hoxa11-as HOXA11 antisense RNA [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500128, updated on 9-Dec-2024

    Summary

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    Symbol
    Hoxa11-asprovided by RGD
    Full Name
    HOXA11 antisense RNAprovided by RGD
    Primary source
    RGD:1564419
    See related
    EnsemblRapid:ENSRNOG00000050564 AllianceGenome:RGD:1564419
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Hoxa11os; RGD1564419; AABR07060585.2; AABR07073021.1
    Summary
    Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Orthologous to human HOXA11-AS (HOXA11 antisense RNA). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Uterus (RPKM 59.0), Kidney (RPKM 25.1) and 1 other tissue See more
    Orthologs
    human mouse all
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    Genomic context

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    See Hoxa11-as in Genome Data Viewer
    Location:
    4q24
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (82677028..82680802)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (81346416..81350190)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 Unlocalized Scaffold NW_007906169.1 (116389..120163)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene homeobox A10 Neighboring gene homeobox A11 Neighboring gene homeo box A13 Neighboring gene even-skipped homeobox 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Effects of lncRNA HOXA11-AS on Sevoflurane-Induced Neuronal Apoptosis and Inflammatory Responses by Regulating miR-98-5p/EphA4. Zhao L, et al. Mediators Inflamm, 2023. PMID 37064501, Free PMC Article
    2. Long noncoding RNA dysregulation in ischemic heart failure. Greco S, et al. J Transl Med, 2016 Jun 18. PMID 27317124, Free PMC Article
    3. Evolution of Hoxa11 regulation in vertebrates is linked to the pentadactyl state. Kherdjemil Y, et al. Nature, 2016 Nov 3. PMID 27706137, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Effects of lncRNA HOXA11-AS on Sevoflurane-Induced Neuronal Apoptosis and Inflammatory Responses by Regulating miR-98-5p/EphA4.
      Title: Effects of lncRNA HOXA11-AS on Sevoflurane-Induced Neuronal Apoptosis and Inflammatory Responses by Regulating miR-98-5p/EphA4.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Other Names

    • homeobox A11, opposite strand

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_132628.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      Related
      ENSRNOT00000075254.4

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      82677028..82680802
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001109234.1: Suppressed sequence

      Description
      NM_001109234.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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