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    Crybg2 crystallin beta-gamma domain containing 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 298543, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Crybg2provided by RGD
    Official Full Name
    crystallin beta-gamma domain containing 2provided by RGD
    Primary source
    RGD:1308621
    See related
    EnsemblRapid:ENSRNOG00000057957 AllianceGenome:RGD:1308621
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Aim1l
    Summary
    Orthologous to human CRYBG2 (crystallin beta-gamma domain containing 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Liver (RPKM 46.2), Lung (RPKM 9.4) and 3 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Crybg2 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (151570154..151602164)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (146286406..146318417)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (152289492..152321539)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene lin-28 homolog A Neighboring gene uncharacterized LOC134487000 Neighboring gene zinc finger protein 683 Neighboring gene ferritin light chain 1-like Neighboring gene CD52 molecule

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    absent in melanoma 1-like protein; beta/gamma crystallin domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001431159.1 → NP_001418088.1  absent in melanoma 1-like protein

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      A0A0G2JVZ7

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      151570154..151602164
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039111283.2 → XP_038967211.1  beta/gamma crystallin domain-containing protein 2 isoform X3

      Conserved Domains (2) summary
      PHA03247
      Location:586 → 948
      PHA03247; large tegument protein UL36; Provisional
      cl02528
      Location:1160 → 1198
      Crystall; Beta/Gamma crystallin

    2. XM_039111282.2 → XP_038967210.1  beta/gamma crystallin domain-containing protein 2 isoform X2

      Conserved Domains (2) summary
      PHA03247
      Location:586 → 948
      PHA03247; large tegument protein UL36; Provisional
      pfam00030
      Location:1342 → 1428
      Crystall; Beta/Gamma crystallin

    3. XM_008764189.4 → XP_008762411.1  beta/gamma crystallin domain-containing protein 2 isoform X1

      Related
      ENSRNOP00000069682.1, ENSRNOT00000089849.3
      Conserved Domains (5) summary
      pfam00030
      Location:1342 → 1428
      Crystall; Beta/Gamma crystallin
      pfam00652
      Location:1702 → 1829
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
      pfam15265
      Location:776 → 947
      FAM196; FAM196 family
      pfam15961
      Location:706 → 831
      DUF4764; Domain of unknown function (DUF4764)
      cl23784
      Location:1763 → 1832
      RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    Nucleotide Protein Strain
    Heading Accession and Version

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