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    Tex48 testis expressed 48 [ Mus musculus (house mouse) ]

    Gene ID: 75524, updated on 27-Nov-2024

    Summary

    Official Symbol
    Tex48provided by MGI
    Official Full Name
    testis expressed 48provided by MGI
    Primary source
    MGI:MGI:1922774
    See related
    Ensembl:ENSMUSG00000058935 AllianceGenome:MGI:1922774
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    bM230C2.3; 1700018C11Rik
    Summary
    Is expressed in otic capsule and skeleton. Orthologous to human TEX48 (testis expressed 48). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 177.4) See more
    Orthologs
    NEW
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    Genomic context

    See Tex48 in Genome Data Viewer
    Location:
    4 C1; 4 34.03 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (63525326..63540670, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (63607089..63622433, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 268 Neighboring gene predicted gene, 24448 Neighboring gene STARR-positive B cell enhancer mm9_chr4:63263195-63263495 Neighboring gene testis expressed 53 Neighboring gene predicted gene, 24234 Neighboring gene predicted gene 11482

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    testis-expressed protein 48

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001356325.1NP_001343254.1  testis-expressed protein 48

      Status: VALIDATED

      Source sequence(s)
      AK006081, AL691484
      Consensus CDS
      CCDS18262.1
      UniProtKB/TrEMBL
      Q9DA81
      Related
      ENSMUSP00000099925.2, ENSMUST00000102861.8
    2. NM_029324.3NP_083600.1  testis-expressed protein 48

      See identical proteins and their annotated locations for NP_083600.1

      Status: VALIDATED

      Source sequence(s)
      AK006081, AL691484
      Consensus CDS
      CCDS18262.1
      UniProtKB/TrEMBL
      Q9DA81
      Related
      ENSMUSP00000099926.4, ENSMUST00000102862.4

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      63525326..63540670 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)