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    LINC01879 long intergenic non-protein coding RNA 1879 [ Homo sapiens (human) ]

    Gene ID: 400661, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC01879provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1879provided by HGNC
    Primary source
    HGNC:HGNC:52698
    See related
    Ensembl:ENSG00000266256 AllianceGenome:HGNC:52698
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC01879 in Genome Data Viewer
    Location:
    18q23
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (76690029..76693636)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (76918479..76922085)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (74401986..74405592)

    Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985151 Neighboring gene NANOG hESC enhancer GRCh37_chr18:74370664-74371165 Neighboring gene uncharacterized LOC105372212 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:74398425-74399381 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:74399393-74400369 Neighboring gene ARF like GTPase 2 binding protein pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13512 Neighboring gene uncharacterized LOC105372213

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_122073.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC034110, AC110743, KF511252
      Related
      ENST00000611889.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

      Range
      76690029..76693636
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060942.1 Alternate T2T-CHM13v2.0

      Range
      76918479..76922085
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)