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    LOC105375172 uncharacterized LOC105375172 [ Homo sapiens (human) ]

    Gene ID: 105375172, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC105375172
    Gene description
    uncharacterized LOC105375172
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in gall bladder (RPKM 1.6), urinary bladder (RPKM 1.4) and 9 other tissues See more
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    Genomic context

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    See LOC105375172 in Genome Data Viewer
    Location:
    7p21.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (17430587..17463138, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (17560326..17592871, complement)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927609 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17983 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17984 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17985 Neighboring gene uncharacterized LOC105375171 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:17411084-17412283 Neighboring gene aryl hydrocarbon receptor Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:17445039-17446238 Neighboring gene long intergenic non-protein coding RNA 2888 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17986 Neighboring gene long intergenic non-protein coding RNA 2889 Neighboring gene Sharpr-MPRA regulatory region 7324 Neighboring gene NANOG hESC enhancer GRCh37_chr7:17638482-17638983 Neighboring gene NANOG hESC enhancer GRCh37_chr7:17702244-17702762 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25675 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25676 Neighboring gene Sharpr-MPRA regulatory region 6645 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:17864406-17864592 Neighboring gene sorting nexin 13 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:17960890-17961390

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    General gene information

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    Clone Names

    • AC019117.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      17430587..17463138 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001745108.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      17560326..17592871 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007078294.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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