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    LMNB1-DT LMNB1 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 102723557, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LMNB1-DTprovided by HGNC
    Official Full Name
    LMNB1 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:53089
    See related
    Ensembl:ENSG00000251072 AllianceGenome:HGNC:53089
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LMNB1-DT in Genome Data Viewer
    Location:
    5q23.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (126751963..126776486, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (127271901..127296442, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (126087655..126112178, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379162 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:126010811-126011405 Neighboring gene bolA family member 3 pseudogene 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23024 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:126084980-126085905 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:126089932-126090098 Neighboring gene heat shock protein family E (Hsp10) member 1 pseudogene 10 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23025 Neighboring gene RNA, U6 small nuclear 752, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16284 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:126112589-126113389 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16287 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16288 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23026 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23027 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23028 Neighboring gene lamin B1 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:126174548-126175292 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:126175293-126176035 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:126176780-126177522 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:126181005-126181974 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:126183029-126183855 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:126211055-126211554 Neighboring gene membrane associated ring-CH-type finger 3 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:126231155-126231764 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23029 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23030 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23031 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23032 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16289

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_134485.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC137794, AI829596, BX111985
      Related
      ENST00000509185.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      126751963..126776486 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      127271901..127296442 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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