Sel1l3 SEL1L family member 3 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Sel1l3provided by RGD
Official Full Name: SEL1L family member 3provided by RGD
Primary source: RGD:1562860
See related: EnsemblRapid:ENSRNOG00000004932 AllianceGenome:RGD:1562860
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1310366; RGD1562860
Summary: Predicted to be located in membrane. Orthologous to human SEL1L3 (SEL1L family member 3). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in Muscle (RPKM 68.9), Brain (RPKM 62.1) and 6 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 14q11

Exon count:: 25

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	14	NC_086032.1 (61988350..62095542)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	14	NC_051349.1 (57775515..57882076)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	14	NC_005113.4 (60122968..60229565)

Chromosome 14 - NC_086032.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: protein sel-1 homolog 3

Names: sel-1 suppressor of lin-12-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001427327.1 → NP_001414256.1 protein sel-1 homolog 3

Status: VALIDATED

Source sequence(s)

JAXUCZ010000014

UniProtKB/TrEMBL

D3ZIJ4

Related

ENSRNOP00000006610.7, ENSRNOT00000006610.8

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086032.1 Reference GRCr8

Range

61988350..62095542

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_006251033.5 → XP_006251095.1 protein sel-1 homolog 3 isoform X1

UniProtKB/TrEMBL

A0A8I5YCG4

Related

ENSRNOP00000077676.1, ENSRNOT00000113070.2

Conserved Domains (4) summary

smart00671
Location:658 → 690

SEL1; Sel1-like repeats

COG0790
Location:576 → 817

TPR; TPR repeat [Signal transduction mechanisms]

sd00010
Location:641 → 670

SLR; SLR repeat [structural motif]

pfam08238
Location:700 → 730

Sel1; Sel1 repeat