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    PIK3IP1-DT PIK3IP1 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 101929760, updated on 10-Dec-2024

    Summary

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    Official Symbol
    PIK3IP1-DTprovided by HGNC
    Official Full Name
    PIK3IP1 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:41072
    See related
    AllianceGenome:HGNC:41072
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    PIK3IP1-AS1
    Expression
    Broad expression in testis (RPKM 1.4), lymph node (RPKM 1.4) and 21 other tissues See more
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    Genomic context

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    See PIK3IP1-DT in Genome Data Viewer
    Location:
    22q12.2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (31335349..31338021)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (31799309..31801981)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (31731335..31734007)

    Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372997 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18855 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18856 Neighboring gene RNA, 5S ribosomal pseudogene 496 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:31724965-31725649 Neighboring gene POZ/BTB and AT hook containing zinc finger 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:31734465-31734965 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:31736003-31736977 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:31738653-31739190 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:31739191-31739729 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:31739730-31740267 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13627 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13628 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13629 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13630 Neighboring gene long intergenic non-protein coding RNA 1521 Neighboring gene RNA, U6 small nuclear 338, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • PIK3IP1 antisense RNA 1 (head to head)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110542.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC005003

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

      Range
      31335349..31338021
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060946.1 Alternate T2T-CHM13v2.0

      Range
      31799309..31801981
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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