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    Tnfsf14 tumor necrosis factor (ligand) superfamily, member 14 [ Mus musculus (house mouse) ]

    Gene ID: 50930, updated on 9-Dec-2024

    Summary

    Official Symbol
    Tnfsf14provided by MGI
    Official Full Name
    tumor necrosis factor (ligand) superfamily, member 14provided by MGI
    Primary source
    MGI:MGI:1355317
    See related
    Ensembl:ENSMUSG00000005824 AllianceGenome:MGI:1355317
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    LTg; HVEML; LIGHT; Ly113; HVEM-L; Tnlg1d
    Summary
    Predicted to enable cysteine-type endopeptidase inhibitor activity involved in apoptotic process; cytokine activity; and identical protein binding activity. Acts upstream of or within several processes, including T cell costimulation; positive regulation of T cell chemotaxis; and positive regulation of myoblast fusion. Predicted to be located in plasma membrane. Predicted to be active in extracellular space. Used to study IgA glomerulonephritis. Orthologous to human TNFSF14 (TNF superfamily member 14). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in spleen adult (RPKM 3.2), thymus adult (RPKM 2.1) and 15 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Tnfsf14 in Genome Data Viewer
    Location:
    17 D; 17 29.71 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (57496437..57501182, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (57189474..57194181, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene predicted gene 11110 Neighboring gene tumor necrosis factor (ligand) superfamily, member 9 Neighboring gene STARR-seq mESC enhancer starr_42920 Neighboring gene predicted gene, 33566 Neighboring gene CD70 antigen Neighboring gene STARR-positive B cell enhancer ABC_E8688 Neighboring gene complement component 3 Neighboring gene microRNA 6978 Neighboring gene thyroid hormone receptor interactor 10 Neighboring gene STARR-positive B cell enhancer ABC_E54 Neighboring gene STARR-positive B cell enhancer ABC_E8689 Neighboring gene G protein-coupled receptor 108

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 
    • Targeted (4)  1 citation

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables cysteine-type endopeptidase inhibitor activity involved in apoptotic process ISO
    Inferred from Sequence Orthology
    more info
     
    enables cysteine-type endopeptidase inhibitor activity involved in apoptotic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables cytokine activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables cytokine activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables signaling receptor binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables signaling receptor binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables tumor necrosis factor receptor binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of T cell chemotaxis IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of_or_within T cell costimulation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in T cell costimulation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cell surface receptor signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in cellular response to mechanical stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within positive regulation of T cell chemotaxis IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in positive regulation of canonical NF-kappaB signal transduction IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in positive regulation of extrinsic apoptotic signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within positive regulation of myoblast differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within positive regulation of myoblast fusion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of non-canonical NF-kappaB signal transduction ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of non-canonical NF-kappaB signal transduction ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane TAS
    Traceable Author Statement
    more info
    PubMed 

    General protein information

    Preferred Names
    tumor necrosis factor ligand superfamily member 14
    Names
    tumor necrosis factor ligand 1d

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_019418.4NP_062291.1  tumor necrosis factor ligand superfamily member 14

      See identical proteins and their annotated locations for NP_062291.1

      Status: VALIDATED

      Source sequence(s)
      CT025692
      Consensus CDS
      CCDS28928.1
      UniProtKB/Swiss-Prot
      Q059Y9, Q9QYH9
      UniProtKB/TrEMBL
      A0A0U5JAA8
      Related
      ENSMUSP00000005976.7, ENSMUST00000005976.8
      Conserved Domains (1) summary
      pfam00229
      Location:110239
      TNF; TNF(Tumour Necrosis Factor) family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      57496437..57501182 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)