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    Pwwp4d PWWP domain containing 4D [ Mus musculus (house mouse) ]

    Gene ID: 546325, updated on 4-Jan-2025

    Summary

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    Official Symbol
    Pwwp4dprovided by MGI
    Official Full Name
    PWWP domain containing 4Dprovided by MGI
    Primary source
    MGI:MGI:3645575
    See related
    Ensembl:ENSMUSG00000079531 AllianceGenome:MGI:3645575
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm5936; EG546325
    Summary
    Orthologous to human PWWP4 (PWWP domain containing 4). [provided by Alliance of Genome Resources, Jan 2025]
    Expression
    Biased expression in testis adult (RPKM 2.3), placenta adult (RPKM 1.9) and 4 other tissues See more
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    Genomic context

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    See Pwwp4d in Genome Data Viewer
    Location:
    X A7.3; X 38.09 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (73880362..73886975)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (74836841..74843369)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_47373 Neighboring gene spindlin family, member 2, pseudogene 3 Neighboring gene X-linked lymphocyte-regulated 5E, pseudogene Neighboring gene predicted gene, 39521 Neighboring gene predicted gene, 54058

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, et al. Nature, 2002 Dec 5. PMID 12466851

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC546325

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081670.2 → NP_001075139.1  uncharacterized protein LOC546325

      See identical proteins and their annotated locations for NP_001075139.1

      Status: VALIDATED

      Source sequence(s)
      BX465196
      Consensus CDS
      CCDS53112.1
      UniProtKB/TrEMBL
      A2BG95
      Related
      ENSMUSP00000109751.2, ENSMUST00000114116.2
      Conserved Domains (1) summary
      cd06080
      Location:413 → 492
      MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      73880362..73886975
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006528140.5 → XP_006528203.1  uncharacterized protein LOC546325 isoform X1

      See identical proteins and their annotated locations for XP_006528203.1

      UniProtKB/TrEMBL
      A2BG95
      Conserved Domains (1) summary
      cd06080
      Location:413 → 492
      MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Research Materials