U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC00459 long intergenic non-protein coding RNA 459 [ Homo sapiens (human) ]

    Gene ID: 100874180, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC00459provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 459provided by HGNC
    Primary source
    HGNC:HGNC:42808
    See related
    Ensembl:ENSG00000229307 AllianceGenome:HGNC:42808
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LINC00459 in Genome Data Viewer
    Location:
    13q21.31
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (62323657..62328847)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (61544627..61549820)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (62897790..62902980)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 11307 Neighboring gene long intergenic non-protein coding RNA 1075 Neighboring gene long intergenic non-protein coding RNA 1074 Neighboring gene ribosomal protein L32 pseudogene 28 Neighboring gene sequestosome 1 pseudogene 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:63022143-63022643 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7806 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7807 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:63086916-63087455 Neighboring gene uncharacterized LOC105370232

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_047038.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL160151
      Related
      ENST00000431656.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      62323657..62328847
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      61544627..61549820
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)