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    LINC00570 long intergenic non-protein coding RNA 570 [ Homo sapiens (human) ]

    Gene ID: 100874055, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC00570provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 570provided by HGNC
    Primary source
    HGNC:HGNC:43717
    See related
    Ensembl:ENSG00000224177 AllianceGenome:HGNC:43717
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ncRNA-a5
    Expression
    Biased expression in bone marrow (RPKM 1.3), duodenum (RPKM 0.5) and 4 other tissues See more
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    Genomic context

    See LINC00570 in Genome Data Viewer
    Location:
    2p25.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (11393981..11403077)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (11427006..11436110)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (11534107..11543203)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 7779 Neighboring gene peptidylprolyl isomerase A pseudogene 60 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:11515871-11516429 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15318 Neighboring gene uncharacterized LOC124907734 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:11529482-11530681 Neighboring gene uncharacterized LOC105373429 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:11565759-11566958 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:11589453-11589714 Neighboring gene E2F transcription factor 6 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:11605481-11606038 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:11606039-11606595

    Genomic regions, transcripts, and products

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_047499.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC099344, AI217162, BX102688
      Related
      ENST00000417473.7

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      11393981..11403077
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      11427006..11436110
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)