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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001346964.2 → NP_001333893.2 glutamate receptor ionotropic, kainate 1 isoform c
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) contains an alternate 3' exon structure, resulting in a novel 3' coding region and 3' UTR, compared to variant 1. It encodes isoform c, which has a shorter and distinct C-terminus, compared to isoform a.
- Source sequence(s)
-
AC093479, AC118681, CT030723
- Consensus CDS
-
CCDS84256.1
- UniProtKB/TrEMBL
- A0A1B0GSI4, A0A2I3BRJ1
- Related
- ENSMUSP00000147948.2, ENSMUST00000211444.2
- Conserved Domains (2) summary
-
- cd06382
Location:38 → 416
- PBP1_iGluR_Kainate; N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the kainate receptors
- cl21456
Location:431 → 800
- Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
-
NM_001405028.1 → NP_001391957.1 glutamate receptor ionotropic, kainate 1 isoform d
Status: REVIEWED
- Source sequence(s)
-
AC093479, AC118681, CT030723
- UniProtKB/TrEMBL
- A0A2I3BPT2, Q8BRT2
- Related
- ENSMUSP00000153786.2, ENSMUST00000227986.2
-
NM_001405029.1 → NP_001391958.1 glutamate receptor ionotropic, kainate 1 isoform e
Status: REVIEWED
- Source sequence(s)
-
AC093479, AC118681, CT030723
- UniProtKB/TrEMBL
- A0A2I3BQM2, Q3UZT1
- Related
- ENSMUSP00000154130.2, ENSMUST00000228188.2
-
NM_001405030.1 → NP_001391959.1 glutamate receptor ionotropic, kainate 1 isoform f
Status: REVIEWED
- Source sequence(s)
-
AC093479, AC118681, CT030723
- UniProtKB/TrEMBL
-
A0A2I3BRJ1
- Related
- ENSMUSP00000154596.2, ENSMUST00000228034.2
-
NM_001405031.1 → NP_001391960.1 glutamate receptor ionotropic, kainate 1 isoform g
Status: REVIEWED
- Source sequence(s)
-
AC093479, AC118681, CT030723
- UniProtKB/TrEMBL
-
A0A2I3BRJ1
-
NM_001405032.1 → NP_001391961.1 glutamate receptor ionotropic, kainate 1 isoform h
Status: REVIEWED
- Source sequence(s)
-
AC093479, AC118681, CT030723
- UniProtKB/TrEMBL
-
Q3UZT1
-
NM_001405033.1 → NP_001391962.1 glutamate receptor ionotropic, kainate 1 isoform i
Status: REVIEWED
- Source sequence(s)
-
AC093479, AC118681, CT030723
- UniProtKB/TrEMBL
-
E9Q2Y1
-
NM_001405034.1 → NP_001391963.1 glutamate receptor ionotropic, kainate 1 isoform j
Status: REVIEWED
- Source sequence(s)
-
AC093479, AC118681, CT030723
-
NM_001405035.1 → NP_001391964.1 glutamate receptor ionotropic, kainate 1 isoform k precursor
Status: REVIEWED
- Source sequence(s)
-
AC093479, AC118681, CT030723
- UniProtKB/TrEMBL
- Q8BQZ0, Q8C825
-
NM_010348.4 → NP_034478.2 glutamate receptor ionotropic, kainate 1 isoform b precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) is missing an in-frame coding exon at the 3' end compared to transcript variant 1, resulting in a shorter isoform (b) lacking a 29 aa segment compared to isoform a.
- Source sequence(s)
-
AC093479, AC118681, CT030723
- Consensus CDS
-
CCDS84254.1
- UniProtKB/TrEMBL
- F6Z3M4, Q3UZT1
- Related
- ENSMUSP00000023652.10, ENSMUST00000023652.16
- Conserved Domains (2) summary
-
- cd06382
Location:38 → 416
- PBP1_iGluR_Kainate; N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the kainate receptors
- cl21456
Location:431 → 800
- Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
-
NM_146072.5 → NP_666184.3 glutamate receptor ionotropic, kainate 1 isoform a precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes isoform a.
- Source sequence(s)
-
AC093479, AC118681, CT030723
- Consensus CDS
-
CCDS84255.1
- UniProtKB/TrEMBL
- F6QF13, Q8BRT2
- Related
- ENSMUSP00000072107.7, ENSMUST00000072256.13
- Conserved Domains (2) summary
-
- cd06382
Location:38 → 416
- PBP1_iGluR_Kainate; N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the kainate receptors
- cl21456
Location:431 → 800
- Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000082.7 Reference GRCm39 C57BL/6J
- Range
-
87692789..88087751 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006522919.5 → XP_006522982.1 glutamate receptor ionotropic, kainate 1 isoform X5
- UniProtKB/TrEMBL
-
Q8BRT2
- Conserved Domains (2) summary
-
- cl10011
Location:40 → 289
- Periplasmic_Binding_Protein_type1; Type 1 periplasmic binding fold superfamily
- cl21456
Location:304 → 673
- Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
-
XM_036159782.1 → XP_036015675.1 glutamate receptor ionotropic, kainate 1 isoform X6
- UniProtKB/TrEMBL
-
Q8BRT2
- Conserved Domains (2) summary
-
- cl10011
Location:40 → 274
- Periplasmic_Binding_Protein_type1; Type 1 periplasmic binding fold superfamily
- cl21456
Location:289 → 658
- Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
-
XM_006522920.4 → XP_006522983.1 glutamate receptor ionotropic, kainate 1 isoform X9
- UniProtKB/TrEMBL
-
Q8BQZ0
- Related
-
ENSMUST00000210910.2
- Conserved Domains (2) summary
-
- cd06382
Location:38 → 431
- PBP1_iGluR_Kainate; N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the kainate receptors
- cl21456
Location:446 → 600
- Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
RNA
-
XR_384929.4 RNA Sequence
-
XR_384930.5 RNA Sequence