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    Fndc11 fibronectin type III domain containing 11 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499953, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Fndc11provided by RGD
    Official Full Name
    fibronectin type III domain containing 11provided by RGD
    Primary source
    RGD:1564340
    See related
    EnsemblRapid:ENSRNOG00000013243 AllianceGenome:RGD:1564340
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1564340
    Summary
    Orthologous to human FNDC11 (fibronectin type III domain containing 11). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward (RPKM 173.7) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Fndc11 in Genome Data Viewer
    Location:
    3q43
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (188708045..188710670)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (168330607..168333111)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (176721100..176724736)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine kinase 6 Neighboring gene uncharacterized LOC108350541 Neighboring gene src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites Neighboring gene helicase with zinc finger 2 Neighboring gene uncharacterized LOC120101833 Neighboring gene glucocorticoid modulatory element binding protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. Prunotto M, et al. J Proteomics, 2013 Apr 26. PMID 23376485

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    fibronectin type III domain-containing protein 11
    Names
    uncharacterized protein C20orf195 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001134620.1 → NP_001128092.1  fibronectin type III domain-containing protein 11

      See identical proteins and their annotated locations for NP_001128092.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474066
      UniProtKB/TrEMBL
      A6KM32, D4A0C8
      Conserved Domains (1) summary
      pfam17744
      Location:1 → 318
      DUF5581; Family of unknown function (DUF5581)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      188708045..188710670
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006235792.5 → XP_006235854.1  fibronectin type III domain-containing protein 11 isoform X1

      See identical proteins and their annotated locations for XP_006235854.1

      UniProtKB/TrEMBL
      A6KM32, D4A0C8
      Related
      ENSRNOP00000061795.3, ENSRNOT00000066617.4
      Conserved Domains (1) summary
      pfam17744
      Location:1 → 318
      DUF5581; Family of unknown function (DUF5581)
    Nucleotide Protein Strain
    Heading Accession and Version

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