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    attf-2 AT hook Transcription Factor family [ Caenorhabditis elegans ]

    Gene ID: 179106, updated on 9-Dec-2024

    Summary

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    Official Symbol
    attf-2
    Official Full Name
    AT hook Transcription Factor family
    Primary source
    WormBase:WBGene00017317
    Locus tag
    CELE_F09G2.9
    See related
    AllianceGenome:WB:WBGene00017317
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable DNA binding activity. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See attf-2 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    6
    Sequence:
    Chromosome: V; NC_003283.11 (7193766..7196137, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene putative cleavage and polyadenylation specificity factor subunit 2 Neighboring gene Phosphate transporter Neighboring gene putative phospholipase D F09G2.8 Neighboring gene ncRNA Neighboring gene Protein CNPPD1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Caenorhabditis elegans RDE-10/RDE-11 complex regulates RNAi by promoting secondary siRNA amplification. Zhang C, et al. Curr Biol, 2012 May 22. PMID 22542102, Free PMC Article
    2. Trifunctional cross-linker for mapping protein-protein interaction networks and comparing protein conformational states. Tan D, et al. Elife, 2016 Mar 8. PMID 26952210, Free PMC Article
    3. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    AT hook Transcription Factor family
    NP_504825.1
    • Product from WormBase gene class attf;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      7193766..7196137 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_072424.8 → NP_504825.1  AT hook Transcription Factor family [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_504825.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O17406
      Conserved Domains (2) summary
      PRK13108
      Location:57 → 186
      PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
      PTZ00108
      Location:136 → 381
      PTZ00108; DNA topoisomerase 2-like protein; Provisional
    Nucleotide Protein
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